View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13037_low_11 (Length: 487)
Name: NF13037_low_11
Description: NF13037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13037_low_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 16 - 339
Target Start/End: Complemental strand, 37790280 - 37789942
Alignment:
| Q |
16 |
ataccaagactttcaactggtgaccaactaagtcaaactcggatactcagagtgcaaccgacaaaactcagtgtctacgatggtggtggtggatcagagg |
115 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37790280 |
ataccaagactttcaatcggtgaccaactgagtcaaactcggatactcagagtgcaaccgacaaaactcagtgtctacgatggtggtggtggatcagagg |
37790181 |
T |
|
| Q |
116 |
tttcgttatggaactcagtcttcgacggagtaatgataagagatgtttcatgataaaacaactgtgaatatgaacaactgcaagggaatggtg------- |
208 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||| |||||| | ||||||||||||||| |
|
|
| T |
37790180 |
tttcgttatggaactcagtcttcgaaggagcaatgataagagatgtttcatgataaaacaaccgtgacgatgaac-agtgcaagggaatggtgacgacga |
37790082 |
T |
|
| Q |
209 |
acgacgacaaaggaaaggggacacggaccgttgccttttctttggggtttcagttcaatccacaaaaacgaggaagcaagttaacttaga---------a |
299 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
37790081 |
acgacgacaaaggtaatgggacacggaccgttgccttttctttggggtttcagttcaatccacaaaaacgaggaagcaagttaacttagaaggcgaagca |
37789982 |
T |
|
| Q |
300 |
gttgtcgtttgtggaagaagatgaaaacaagaggtaaaca |
339 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
37789981 |
gttgtcgtttgtggaagaagaagaaaacaagaggtaaaca |
37789942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 403 - 469
Target Start/End: Complemental strand, 37789878 - 37789812
Alignment:
| Q |
403 |
gcagctgcttcctatggcatatagaaatcccaatagtttattactgaagtctgcatgttgtggttcc |
469 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
37789878 |
gcagctgcttcctatggcatatagaaatcccaatagtttattactgaagtctgcatgttgtagttcc |
37789812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 403 - 462
Target Start/End: Complemental strand, 37800718 - 37800659
Alignment:
| Q |
403 |
gcagctgcttcctatggcatatagaaatcccaatagtttattactgaagtctgcatgttg |
462 |
Q |
| |
|
||||||||||||||| ||| |||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
37800718 |
gcagctgcttcctatagcacatagaacgcccaatagtttattactaaagtctgcatgttg |
37800659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University