View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13037_low_12 (Length: 480)
Name: NF13037_low_12
Description: NF13037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13037_low_12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 1 - 441
Target Start/End: Complemental strand, 32261487 - 32261047
Alignment:
| Q |
1 |
gacacataagggactttcttgaattgggttgcaaatttccactagggcagtcatgccacgaacgtttccttcactatgtaaacaagtaacaatgcgaaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32261487 |
gacacataagggactttcttgaattgggttgcaaatttccactagggcagtcatgccacgaacgtttccttcactatgtaaacaagtaacaatgcgaaac |
32261388 |
T |
|
| Q |
101 |
tctgaatttcttggagtgttttggattgttctcatttcttcatcaaatatgcttgatgaacttaagactcgaggacgatgcttgtataacaatttaatga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
32261387 |
tctgaatttcttggagtgttttggattgttctcatttcttcatcaaatatgcttgatgaacttaatactcgaggacgatgcttgtataacaatttaatga |
32261288 |
T |
|
| Q |
201 |
ggggtatgatgattgcagttgtaaccaccacacctatcatcaagtgactcaatgtttcatcatccattagctacaaacataaagttaatttgttagtttg |
300 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32261287 |
ggggtgtgatgattgcagttgtaaccaccacacctatcatcaagtgactcaatgtttcatcatccattagctacaaacataaagttaatttgttagtttg |
32261188 |
T |
|
| Q |
301 |
ttgtgtaaaactataaaatacaaatagggtcaaaggtaaaattaaagacaacatatacatagtttggggttggataactcaattgatagctaaaggatta |
400 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32261187 |
ttgtgtaaaactataaaatacaaataggatcaaaggtaaaattaaagacaacatatacatagtttggggttggataactcaattgatagctaaaggatta |
32261088 |
T |
|
| Q |
401 |
aaaagagtttaagagttaaaggttcagggttcaagtcttgc |
441 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32261087 |
aaaagagtttaagagttaaaggttcagggttcaagtcttgc |
32261047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University