View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13037_low_15 (Length: 448)
Name: NF13037_low_15
Description: NF13037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13037_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 11 - 428
Target Start/End: Complemental strand, 25027473 - 25027055
Alignment:
| Q |
11 |
cagagatctaacataaatacctaaatatataccccctgtaactatatgtttgtctatatggatatggaacaagtgagacatgtataaaatgataatgtct |
110 |
Q |
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| T |
25027473 |
cagagatctaacataaatacctaaatatataccccctgtaactatatgtttgtctatatggatatggaacaagtgagacatgtataaaatgataatgtct |
25027374 |
T |
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| Q |
111 |
atgtgagaaaaagtgttttgggggaatattgaagcagcatatgctggggtaccatcattgtgttttagactttttcccc--atagcatcatcatgatcat |
208 |
Q |
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| T |
25027373 |
atgtgagaaaaagtgttttgggggaatattgaagcagcatatgctggggtaccatcattgtgttttagactttttccccatatagcatcatcatgatcat |
25027274 |
T |
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| Q |
209 |
ggtaaaaatcttacattactgtcaccgaatatttacatttacataaagataagatgcatattgcatttgcattagtctctatgctaaattagaattacac |
308 |
Q |
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| T |
25027273 |
ggtaaaaatcttacattactgtcaccgaatatttacatttacataaagataagatgcatattgca-ttgcattagtctctatgctaaattagaattacac |
25027175 |
T |
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| Q |
309 |
actacatatatcaaactaacgtgtgataattataatgatggggtttaacatatagatttcatgacaaataatgtctttgacctaaatagaagctccccta |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25027174 |
actacatatatcaaactaacgtgtgataattataatgatggggtttaacatatagatttcatgacaaataatgtctttgacctaaatagaagctccccta |
25027075 |
T |
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| Q |
409 |
taagatcatactaagtgacc |
428 |
Q |
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| T |
25027074 |
taggatcatactaagtgacc |
25027055 |
T |
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