View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13037_low_16 (Length: 447)
Name: NF13037_low_16
Description: NF13037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13037_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 379; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 19 - 431
Target Start/End: Complemental strand, 36049056 - 36048647
Alignment:
| Q |
19 |
gaacactataaaccctaattattcacgaaataattcagaattattacaactgctctttagtggcaacacttggccgaattcttcactcttatgtaattag |
118 |
Q |
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| T |
36049056 |
gaacactataaaccctaattattcacaaaataatacagaatta---caactgctctttagtggcaacacttggccgaattcttcactcttatgtaattag |
36048960 |
T |
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| Q |
119 |
ttgttgttctaaccggaaccacgactttagtaggccccgctactaactcgccctttgttgattgcttgtttgcaatttaagtgaaggtggtgtgattttg |
218 |
Q |
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| T |
36048959 |
ttgttgttctaaccggaaccacgactttagtaggccccgctactaactcgccctttgttgattgcttgtttgcaatttaagtgaaggtggtgtgattttg |
36048860 |
T |
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| Q |
219 |
ttgaaatggaaagtgtaatttctatagtgtgatgctatgatcctgtcaaactcaccaataattcaaagtttcaaacaagaactaaagagaataaaaataa |
318 |
Q |
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| T |
36048859 |
ttgaaatggaaagtgtaatttctatagtgcgatgctatgatcctgtcaaactcaccaataattcaaagtttcaaacaagaactaaagagaataaaaataa |
36048760 |
T |
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| Q |
319 |
agataccttgttatctttgttgacattatttagtaggctaatgtagcatcttttcgtgactatcaagtttttatactcccttttgacagtttccagtgcg |
418 |
Q |
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| T |
36048759 |
agataccttgttatctttgttgacattatttagtaggctaatgtagcatcttctcgtggctatcaagtttttatactcccttttgacagtttccagtgcg |
36048660 |
T |
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| Q |
419 |
agctttagctttt |
431 |
Q |
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| T |
36048659 |
agctttagctttt |
36048647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 338 - 429
Target Start/End: Complemental strand, 36029693 - 36029602
Alignment:
| Q |
338 |
ttgacattatttagtaggctaatgtagcatcttttcgtgactatcaagtttttatactcccttttgacagtttccagtgcgagctttagctt |
429 |
Q |
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| T |
36029693 |
ttgacattattcaacaagctaatgtagtctcttcttgtggctatcaggttttcatactctcttttgagagtttctagtgcaagctttagctt |
36029602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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