View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13037_low_19 (Length: 416)
Name: NF13037_low_19
Description: NF13037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13037_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 390; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 8 - 401
Target Start/End: Complemental strand, 51404198 - 51403805
Alignment:
| Q |
8 |
aaatgtcactgatgtgctgactccatggatatttgagattgctgactacaagcgatcaaaatctggatagataggaagacagataggtaccttgcgatcc |
107 |
Q |
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| T |
51404198 |
aaatgtcactgatgtgctgactccatggatatttgagattgctgactacaagcgatcaaaatctggatagataggaagacagataggtaccttgcgatcc |
51404099 |
T |
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| Q |
108 |
tttccgatgttgagaacaatgagctcaaccaatcccttggtgttcatgagaaatccaagtgcaagagcttctctaaaaggcaccttgcatagcaatgata |
207 |
Q |
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| T |
51404098 |
tttccgatgttgagaacaatgagttcaaccaatcccttggtgttcatgagaaatccaagtgcaagagcttctctaaaaggcaccttgcatagcaatgata |
51403999 |
T |
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| Q |
208 |
ctgagattgtaccaacgatttttccaaagcaagcagtaaatataactagtaataatagtgcccaagaaacccctccacttatagtagccacatttgtctt |
307 |
Q |
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| T |
51403998 |
ctgagattgtaccaacgatttttccaaagcaagcagtaaatataactagtaataatagtgcccaagaaacccctccacttatagtagccacatttgtctt |
51403899 |
T |
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| Q |
308 |
caaaccactagaagcaaaatagagtggcaaaaagattccagacacaagatcttcaatcttctcaattaaaacaccagcaaaaggaccatcttta |
401 |
Q |
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| T |
51403898 |
caaaccactagaagcaaaatagagtggcaaaaagattccagacacaagatcttcaatcttctcaattaaaacaccagcaaaaggaccatcttta |
51403805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 95 - 394
Target Start/End: Original strand, 29982716 - 29983015
Alignment:
| Q |
95 |
taccttgcgatcctttccgatgttgagaacaatgagctcaaccaatcccttggtgttcatgagaaatccaagtgcaagagcttctctaaaaggcaccttg |
194 |
Q |
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| T |
29982716 |
taccttgcgatccttgccgatgttgagaacaatgagctccaccaatcccttggtgttcatgagaaatccaagggtcaaagcttctctaaaaggaatctta |
29982815 |
T |
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| Q |
195 |
catagcaatgatactgagattgtaccaacgatttttccaaagcaagcagtaaatataactagtaataatagtgcccaagaaacccctccacttatagtag |
294 |
Q |
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| T |
29982816 |
cacagcaatgacacaactaatgtgccaacaactttaccaaagcaagcagtaaatataacaaggattaataatccccaagaaagtgctccactaatagtag |
29982915 |
T |
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| Q |
295 |
ccacatttgtcttcaaaccactagaagcaaaatagagtggcaaaaagattccagacacaagatcttcaatcttctcaattaaaacaccagcaaaaggacc |
394 |
Q |
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| T |
29982916 |
ctacattagtcttcaatccactagacacaaaataaagtggcaacaaaagactcattacaagatcctcaatcttctcagtcaaaatactagcaaaaggacc |
29983015 |
T |
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