View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13037_low_2 (Length: 707)
Name: NF13037_low_2
Description: NF13037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13037_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 500; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 18 - 605
Target Start/End: Original strand, 4358670 - 4359257
Alignment:
| Q |
18 |
ttaagaaacaaaattatgaaacaagattcaatcttgtttcctcaactgcgagtagaacctctttatgaatgcatcagcagccttgtccacctcggcgtcg |
117 |
Q |
| |
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||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
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| T |
4358670 |
ttaagaaacaaaactatgaaacaagactcaatcttgtttcctcaactgcgagtagaacctccttatgaatgcatcggcagccttgtccacctcggcgtcg |
4358769 |
T |
|
| Q |
118 |
gcgtcagtgtcgtgtagcggaaaaggtgagtcggtcaccctcaactgccttgccttaggagtccgtccaaatccgggaagtgccggtgaagcctcgacaa |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||| ||||||| |
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| T |
4358770 |
gcgtcagtgtcgtgtagcggaaaaggtgagtcggtcaccctcaactgccgcgccttaggagtccttccaaatccgggaagtgccggggaagcttcgacaa |
4358869 |
T |
|
| Q |
218 |
tcacttcattattgtttaccatgctctccaacacagctttaaccgcattaacggtcacaatgtcgtcgtcttgtgtgagaggcgcgtgagtacacgtgaa |
317 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||| ||||||||| |
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| T |
4358870 |
ttacttcattattgtttaccatgctctccaacacagctttaaccgcattaacggttacaatgtcgtcttcttttgtgagaggcgcgtgagcacacgtgaa |
4358969 |
T |
|
| Q |
318 |
gaagttatgacgcttgttgtttagggcaaatttgtaacttggggtgttgctgcagctgaactcatactcccttgtggtagagaggcgtgtgtcgttacgg |
417 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
4358970 |
gaagttatgacgcttgttgtttagggcaaatttgtagttgggtgtgttgctgcagctgaactcatactcccttgtggtagagaggcgtgtgtcattacgg |
4359069 |
T |
|
| Q |
418 |
cggcttgaggtggagccaccatggtggtgatgaaacatgaggttggtgatggcttttccggcgagcttgccgcggcgtttaaccatcatgttgaggtcca |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4359070 |
cggcttgaggtggagccaccatggtggtgatgaaacatgaggttggtgatggcttttccggcgagcttgccgcggcgtttaaccatcatgttgaggtcca |
4359169 |
T |
|
| Q |
518 |
tcattagttttccctttgatatgccttttcttaacatgaacaaagccacacgtatcatactccatactctcttggttattattggtac |
605 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||| |
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|
| T |
4359170 |
tcattagttttccctttgatatgccttttcttaacatgaacaaggccacacgtatcatactccatactctcttagtaattattggtac |
4359257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 18 - 605
Target Start/End: Complemental strand, 4353600 - 4353014
Alignment:
| Q |
18 |
ttaagaaacaaaattatgaaacaagattcaatcttgtttcctcaactgcgagtagaacctctttatgaatgcatcagcagccttgtccacctcggcgtcg |
117 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
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| T |
4353600 |
ttaagaaacaaaactatgaaacaagactcaatcttgtttcctcaactgcgagtagaacctccttatgaatgcatcggcagccttgtccacctcggcgtcg |
4353501 |
T |
|
| Q |
118 |
gcgtcagtgtcgtgtagcggaaaaggtgagtcggtcaccctcaactgccttgccttaggagtccgtccaaatccgggaagtgccggtgaagcctcgacaa |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||| ||||||| |
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| T |
4353500 |
gcgtcagtgtcgtgtagcggaaaaggtgagtcggtcaccctcaactgccgcgccttaggagtccttccaaatccgggaagtgccggggaagcttcgacaa |
4353401 |
T |
|
| Q |
218 |
tcacttcattattgtttaccatgctctccaacacagctttaaccgcattaacggtcacaatgtcgtcgtcttgtgtgagaggcgcgtgagtacacgtgaa |
317 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||| ||||||||| |
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|
| T |
4353400 |
ttacttcattattgtttaccatgctctccaacacagctttaaccgcattaacggttacaatgtcgtcttcttttgtgagaggcgcgtgagcacacgtgaa |
4353301 |
T |
|
| Q |
318 |
gaagttatgacgcttgttgtttagggcaaatttgtaacttggggtgttgctgcagctgaactcatactcccttgtggtagagaggcgtgtgtcgttacgg |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
4353300 |
gaagttatgacgcttgttgtttagggcaaatttgtagttgggtgtgttgctgcagctgaactcatactcccttgtggtagagaggcgtgtgtcattacgg |
4353201 |
T |
|
| Q |
418 |
cggcttgaggtggagccaccatggtggtgatgaaacatgaggttggtgatggcttttccggcgagcttgccgcggcgtttaaccatcatgttgaggtcca |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||| ||||||||||||||||||| |
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|
| T |
4353200 |
cggcttgaggtggagccaccatggtggtgatgaaacatgaggttggtgatggcttttccggcaagctt-ctacggcgtttgaccatcatgttgaggtcca |
4353102 |
T |
|
| Q |
518 |
tcattagttttccctttgatatgccttttcttaacatgaacaaagccacacgtatcatactccatactctcttggttattattggtac |
605 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4353101 |
tcattagttttccctttgatataccttttcttaacatgaacaaagccacacgtatcatactccatactctcttggttattattggtac |
4353014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 277; E-Value: 1e-154
Query Start/End: Original strand, 158 - 605
Target Start/End: Complemental strand, 4350083 - 4349627
Alignment:
| Q |
158 |
tcaactgccttgccttaggagtccgtccaaatccgggaagtgccggtgaagcctcgacaatcacttcattattgtttaccatgctctccaacacagcttt |
257 |
Q |
| |
|
|||||||||| | | ||||||| |||| | | ||||| || |||| |||||||| | ||||| ||||||||||||||||| |||| |||||||| || |
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|
| T |
4350083 |
tcaactgcctggtcataggagttcgtcgagaaccggggagcaccggggaagcctcacctatcacctcattattgtttaccattttctctaacacagcctt |
4349984 |
T |
|
| Q |
258 |
aaccgcattaacggtcacaatgtcgtcgtcttgtgtgagaggcgcgtgagtacacgtgaagaagttat---------gacgcttgttgtttagggcaaat |
348 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||| | | || |||||||| | | |||| |
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| T |
4349983 |
aaccgcattaacggtaacaatgtcatcgtcttgtgtgagaggcgcgtgagcacacgtgaagaagtggttgttgcggtggcgtttgttgttaaatgaaaat |
4349884 |
T |
|
| Q |
349 |
ttgtaacttggggtgttgctgcagctgaactcatactcccttgtggtagagaggcgtgtgtcgttacggcggcttgaggtggagccaccatggtggtgat |
448 |
Q |
| |
|
||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
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|
| T |
4349883 |
ttgtatttaggggtgttgctacagctgaactcatactcccttgtggtagagaggcgtgtgtcgttacgacggcttgaggtggagccaccgtggtggtgat |
4349784 |
T |
|
| Q |
449 |
gaaacatgaggttggtgatggcttttccggcgagcttgccgcggcgtttaaccatcatgttgaggtccatcattagttttccctttgatatgccttttct |
548 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4349783 |
gaaacatgaggttggtgatggcttttccggcgagcttgccgcggtgtttaaccatcatgttgaggtccatcattagttttccctttgatatgccttttct |
4349684 |
T |
|
| Q |
549 |
taacatgaacaaagccacacgtatcatactccatactctcttggttattattggtac |
605 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4349683 |
taacatgaacaaagccacacgtatcatactccatactctcttggttattattggtac |
4349627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 4350208 - 4350113
Alignment:
| Q |
18 |
ttaagaaacaaaattatgaaacaagattcaatcttgtttcctcaactgcgagtagaacctctttatgaatgcatcagcagccttgtccacctcggc |
113 |
Q |
| |
|
||||||||||||||| |||||||| | || ||| | || | |||||||| |||| ||||||||||| ||||| || ||||||||||| |||||||| |
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|
| T |
4350208 |
ttaagaaacaaaattgtgaaacaaaactccatcctcttacttcaactgcaagtaaaacctctttataaatgcttcggcagccttgtctacctcggc |
4350113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 4e-34; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 415 - 590
Target Start/End: Original strand, 43475430 - 43475611
Alignment:
| Q |
415 |
cggcggcttgaggtggagccaccatggtggtgatga------aacatgaggttggtgatggcttttccggcgagcttgccgcggcgtttaaccatcatgt |
508 |
Q |
| |
|
||||||||||||||||||||||| |||| ||| ||| ||||| || |||| |||||||||||||||||||||| ||||||||| | |||||||| |
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|
| T |
43475430 |
cggcggcttgaggtggagccaccgtggttgtggtgatggtggaacattagattggcaatggcttttccggcgagcttgctgcggcgtttgagcatcatgt |
43475529 |
T |
|
| Q |
509 |
tgaggtccatcattagttttccctttgatatgccttttcttaacatgaacaaagccacacgtatcatactccatactctctt |
590 |
Q |
| |
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| ||| ||||||||||||| |||||||| || |||||||| |||||||| || |||||||||| ||||||||| ||| |||| |
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|
| T |
43475530 |
ttaggcccatcattagtttgccctttgacataccttttctcaacatgaagaaggccacacgtaccatactccacactttctt |
43475611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 466 - 590
Target Start/End: Original strand, 43486106 - 43486230
Alignment:
| Q |
466 |
atggcttttccggcgagcttgccgcggcgtttaaccatcatgttgaggtccatcattagttttccctttgatatgccttttcttaacatgaacaaagcca |
565 |
Q |
| |
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|||||||||||||| ||||||| ||||||||| | ||||||||| ||| ||||||| |||||||||||||| ||||||||||| |||||||| || || | |
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|
| T |
43486106 |
atggcttttccggcaagcttgctgcggcgtttgagcatcatgtttaggcccatcatcagttttccctttgaaatgccttttctcaacatgaagaaggcta |
43486205 |
T |
|
| Q |
566 |
cacgtatcatactccatactctctt |
590 |
Q |
| |
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|||||| ||||||||| |||||||| |
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| T |
43486206 |
cacgtaccatactccacactctctt |
43486230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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