View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13037_low_22 (Length: 388)
Name: NF13037_low_22
Description: NF13037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13037_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 322; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 13 - 371
Target Start/End: Complemental strand, 4893943 - 4893585
Alignment:
| Q |
13 |
aatattttgagcaaaagtcccttttgcttttggcaatggatcctaatgagcacatccttgtccaaaactttggcttctacatgtgggagagtttcattaa |
112 |
Q |
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| T |
4893943 |
aatattttgagcaaaagtcccttttgcttttggcaatggatccttatgagcacatccttgtccaaaactttggcttctacatgtgggagagtttcattat |
4893844 |
T |
|
| Q |
113 |
taccactagcagcttcagagtcatcactgtttgatgagtcgtaacttagttgtggttcatcaaccgtcaccacagactgaacatgactatttttgttttg |
212 |
Q |
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| T |
4893843 |
taccactagcaacttcagagtcatcactgtttgatgagtcgtaacttagttgttgttcatcaaccgtcaccacagactgaacatgactatttttgttttg |
4893744 |
T |
|
| Q |
213 |
ttcctctaataccctcaaacgttcttggagctctttcacgtacttgattgcatctcctaggactgaagccttgtccatctgtagannnnnnnacaacata |
312 |
Q |
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| T |
4893743 |
ttcctctaataccctcaaacgttcttggagctctttcacgtacttgattgcatctcctaggactgaagccttgtccatctgtagatttttttacaacata |
4893644 |
T |
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| Q |
313 |
ataaagtttacttagatgctaaaattcctataattaatagctacctatatagtagttgt |
371 |
Q |
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| T |
4893643 |
ataaagtttacttagatgctaaaattcctataattaatagctacctatatagtagttgt |
4893585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 33 - 297
Target Start/End: Complemental strand, 4917377 - 4917113
Alignment:
| Q |
33 |
cttttgcttttggcaatggatcctaatgagcacatccttgtccaaaactttggcttctacatgtgggagagtttcattaataccactagcagcttcagag |
132 |
Q |
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| T |
4917377 |
cttttgtttttggcactggatccttatgagaacgtctttgcccaaaattttggcttccacatgagggagagtttcattattagcactagcagccttagaa |
4917278 |
T |
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| Q |
133 |
tcatcactgtttgatgagtcgtaacttagttgtggttcatcaaccgtcaccacagactgaacatgactatttttgttttgttcctctaataccctcaaac |
232 |
Q |
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| T |
4917277 |
ccatcatcactccatgactcataatttagcttcggtttgttaagcgtcactacaaactcaataggactattcttgttttgttcttctaatactctcaaac |
4917178 |
T |
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| Q |
233 |
gttcttggagctctttcacgtacttgattgcatctcctaggactgaagccttgtccatctgtaga |
297 |
Q |
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| T |
4917177 |
gttcttggagctcttttacatgcttgatagcatcccctatgactgaagccttgtccatctataga |
4917113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 33 - 294
Target Start/End: Complemental strand, 4910322 - 4910061
Alignment:
| Q |
33 |
cttttgcttttggcaatggatcctaatgagcacatccttgtccaaaactttggcttctacatgtgggagagtttcattaataccactagcagcttcagag |
132 |
Q |
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||||||||||||||| |||||||| |||||||| | |||||||||| |||||| || || || ||||||| ||||||| || |||||||||| | ||| |
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| T |
4910322 |
cttttgcttttggcactggatccttatgagcacgtttttgtccaaaattttggcatccacgtgagggagagattcattattagcactagcagccttagaa |
4910223 |
T |
|
| Q |
133 |
tcatcactgtttgatgagtcgtaacttagttgtggttcatcaaccgtcaccacagactgaacatgactatttttgttttgttcctctaataccctcaaac |
232 |
Q |
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||||| | |||| | |||| |||| | || | || |||||| ||||| | || ||||||||| ||||| | ||| |||||||| ||||||| |
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| T |
4910222 |
ccatcatcactccatgacttgtaaattagcagcaatttgttaagcgtcactacagattcaatatgactattcttgttctcttcttctaatactctcaaac |
4910123 |
T |
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| Q |
233 |
gttcttggagctctttcacgtacttgattgcatctcctaggactgaagccttgtccatctgt |
294 |
Q |
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|||| |||||||||||||| | |||||| |||||||||| |||||||| |||||| ||||| |
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| T |
4910122 |
gttcctggagctctttcacatgcttgatagcatctcctatgactgaagtattgtccgtctgt |
4910061 |
T |
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