View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13037_low_23 (Length: 380)
Name: NF13037_low_23
Description: NF13037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13037_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 342; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 5195727 - 5196088
Alignment:
| Q |
1 |
taacaaacaaaagataaaatgagtcactgctatatccataaattaaattcgtggagggaaaattcactagatgaagcaataagttaatcaaatcaaaact |
100 |
Q |
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| T |
5195727 |
taacaaacaaaagataaaattagtcactgctatatccataaattaaattcgtggaggaaaaattcactagatgaagcaataagttaatcaaatcaaaact |
5195826 |
T |
|
| Q |
101 |
ggtaaaatacaaaaatttgttactccagtgtccagaaattagtcacgaattagtagttgaacaaaaatgagttctgcagatcttgctatagaaatacata |
200 |
Q |
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| T |
5195827 |
ggtaaaatacaaaaattcgttactccagtatccagaaattagtcacgaattagtagttgaacaaaaatgagttctgcagatcttgatatagaaatacata |
5195926 |
T |
|
| Q |
201 |
aactccaaactaccatcagacctaagtggatatatttgcagctagatgttgaagaatatattacactcacattatatagtgtcatatatccaacccaaca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5195927 |
aactccaaactaccatcagacctaagtggatatatttgcagctagatgttgaagaatatattacactcacattatatagtgtcatatatccaacccaaca |
5196026 |
T |
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| Q |
301 |
gctacctctttctcttccttcccttcaagaatctcacatggcttttcaagccaactagaacc |
362 |
Q |
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| T |
5196027 |
gctacctctttctcttccttcccttcaagaatctcacatggcttttcaagccaactagaacc |
5196088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 255 - 354
Target Start/End: Complemental strand, 7392320 - 7392221
Alignment:
| Q |
255 |
aatatattacactcacattatatagtgtcatatatccaacccaacagctacctctttctcttccttcccttcaagaatctcacatggcttttcaagccaa |
354 |
Q |
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| T |
7392320 |
aataaattacactcacgttatatagcgtcatatatccaacccagcaactacctctttctcttccttcccttcaagaatctcacatggcttttcaagccaa |
7392221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 255 - 354
Target Start/End: Original strand, 19584789 - 19584888
Alignment:
| Q |
255 |
aatatattacactcacattatatagtgtcatatatccaacccaacagctacctctttctcttccttcccttcaagaatctcacatggcttttcaagccaa |
354 |
Q |
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|||| ||||||||||| |||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19584789 |
aataaattacactcacgttatatagcgtcatatatccaacccagcaactacctctttctcttccttcccttcaagaatctcacatggcttttcaagccaa |
19584888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 255 - 357
Target Start/End: Original strand, 11656529 - 11656631
Alignment:
| Q |
255 |
aatatattacactcacattatatagtgtcatatatccaacccaacagctacctctttctcttccttcccttcaagaatctcacatggcttttcaagccaa |
354 |
Q |
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|||| ||||||||||| |||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11656529 |
aataaattacactcacgttatatagcgtcatatatccaacccagcaactacctctttctcttccttcccttcaagaatctcacatggcttttcaagccaa |
11656628 |
T |
|
| Q |
355 |
cta |
357 |
Q |
| |
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||| |
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|
| T |
11656629 |
cta |
11656631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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