View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13037_low_24 (Length: 378)
Name: NF13037_low_24
Description: NF13037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13037_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 190 - 365
Target Start/End: Original strand, 10052986 - 10053161
Alignment:
| Q |
190 |
tttgagttttatttctattttatgtaggatcataaatgttggacttcacgatatacaactttcctcgagaaaccaacatcatttttgctatttatttcga |
289 |
Q |
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| T |
10052986 |
tttgagttttatttctattttatgtaggatcataaatgttggacttcacgatatgcaactttcctcgagaaaccaacatcatttttgctatttatttcga |
10053085 |
T |
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| Q |
290 |
ttatgacttttgcattgtgttttccctttctcaaatggtttagataaaattctcattcatcatattaatataattg |
365 |
Q |
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| T |
10053086 |
ttatgatttttgcattgtgttttcactttctcaaatggtttagataaaattctcattcatcatattaatataattg |
10053161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 17 - 199
Target Start/End: Original strand, 10052780 - 10052959
Alignment:
| Q |
17 |
ttaaattttgattttaaatgatatacataatgtctctcttcttcataatattccataatatttcacaagcttccttcttgacccaacaatattaaatttt |
116 |
Q |
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| T |
10052780 |
ttaaattttaattttaaatgatatacataatgtctctctagtctct--tcttc-ataatattccacaagcttccttcttgacccaacaatattaattttt |
10052876 |
T |
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| Q |
117 |
tattttaagtttaacagaaccttacatatttgatttgtgggatgaaggatattactgctatttgtaaattcattttgagtttt |
199 |
Q |
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| T |
10052877 |
tattttaagtttaacagagccttacatatttgacttgtgggatgaaggatattactgctacttgtaaattcattttgggtttt |
10052959 |
T |
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