View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13037_low_25 (Length: 356)
Name: NF13037_low_25
Description: NF13037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13037_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 45400241 - 45400589
Alignment:
| Q |
1 |
ttgtattcttccatggactaagatgcaagccataaaggaaaactagttaagacttctgagtctcataatgtgaagttttggtgtaatgttagatttgaat |
100 |
Q |
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| T |
45400241 |
ttgtattcttccatggactaagatgcaagccataaaggaaaaccagttaagacttctgagtctcataatgtgaagttttggtgtaatgttagatttgaat |
45400340 |
T |
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| Q |
101 |
atgatgtcatcatgctaacattgaccagaaagtaccattacattaattcaatgccaaaattttcaataagtgagatgttgatttaataagttcaattttg |
200 |
Q |
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| T |
45400341 |
atgatgtcatcatgctaacattgaccagaaagtaccattacattaattcaatgccaaaattttcaataagtgagatgttgatttaataagttcaattttg |
45400440 |
T |
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| Q |
201 |
tttttgtcaaactttgatttgggaatggcactataagtaatgtttccatgacttatagacatttccaaccctgccctgcgcaa--ttgtgttaagctcat |
298 |
Q |
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| T |
45400441 |
tttttgtcaaactttgatttgggaatggcactataagtaatgtttccatgacttatagacatttcgaaccctgccctgcgcaactgtgtgttaagctcat |
45400540 |
T |
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| Q |
299 |
ggataacaattatatactattttttgtgattaatcaactatagtataat |
347 |
Q |
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| T |
45400541 |
gggtaacaattatatactattttttgtgattaatcaactatagtataat |
45400589 |
T |
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