View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13037_low_26 (Length: 353)

Name: NF13037_low_26
Description: NF13037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13037_low_26
NF13037_low_26
[»] chr4 (10 HSPs)
chr4 (1-336)||(48156389-48156724)
chr4 (71-191)||(45372110-45372230)
chr4 (145-191)||(49044311-49044357)
chr4 (77-119)||(47207894-47207936)
chr4 (71-121)||(48170600-48170650)
chr4 (137-191)||(48891326-48891380)
chr4 (145-189)||(49048699-49048743)
chr4 (137-191)||(48852577-48852631)
chr4 (142-191)||(48898633-48898682)
chr4 (145-193)||(37827109-37827157)
[»] chr6 (1 HSPs)
chr6 (142-239)||(21015672-21015769)
[»] chr3 (4 HSPs)
chr3 (145-193)||(47452022-47452070)
chr3 (77-124)||(11005997-11006044)
chr3 (77-124)||(11015560-11015607)
chr3 (77-124)||(11024572-11024619)
[»] chr7 (1 HSPs)
chr7 (145-193)||(48883710-48883758)


Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 48156389 - 48156724
Alignment:
Q  1 tttccaagtattatctctcaatgnnnnnnncctcaaacacggatagtccattaattcttggcatgttacagaaactaccaagtaatcatctcttaattga 100  Q
    |||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48156389 tttccaagtattatctctcaatgaaaaaaacctcaaacacggatagtccattaattcttggcatgttacagaaactaccaagtaatcatctcttaattga 48156488  T
Q  101 tcatacccaaatccatatagacaatggaaactatttgaatcattaggagacaaaggtatttgtttgtaaactctagttgatggattccatatgaataggt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48156489 tcatacccaaatccatatagacaatggaaactatttgaatcattaggagacaaaggtatttgtttgtaaactctagttgatggattccatatgaataggt 48156588  T
Q  201 ctggatcattgtgcagaaatataaatcctctacacgaacttgaattcgtatcaagtgaatcacatgggggttccacaaaattagggatcgggttgggtat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  48156589 ctggatcattgtgcagaaatataaatcctctacacgaacttgaattcgtatcaagtgaatcacatgggggttccacaaaattagggatcgggttgggaat 48156688  T
Q  301 ttcagaaacagcattatcacaatccaatgcttcaaa 336  Q
    ||||||||||||||||||||||| ||||||||||||    
T  48156689 ttcagaaacagcattatcacaatgcaatgcttcaaa 48156724  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 71 - 191
Target Start/End: Original strand, 45372110 - 45372230
Alignment:
Q  71 gaaactaccaagtaatcatctcttaattgatcatacccaaatccatatagacaatggaaactatt-tgaatcattaggagacaaaggtatttgtttgtaa 169  Q
    ||||| |||||||||||||||||||| | ||||||||||||||||||  || ||| |||| ||||  |||| ||||||||| |||||||||||||| | |    
T  45372110 gaaaccaccaagtaatcatctcttaactcatcatacccaaatccatagggataatagaaa-tattgagaataattaggagaaaaaggtatttgtttctga 45372208  T
Q  170 actctagttgatggattccata 191  Q
    || | ||| |||||||||||||    
T  45372209 acaccagtggatggattccata 45372230  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 145 - 191
Target Start/End: Original strand, 49044311 - 49044357
Alignment:
Q  145 aggagacaaaggtatttgtttgtaaactctagttgatggattccata 191  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||||    
T  49044311 aggagacaaaggtatttgtttgtgaactctagtggatggattccata 49044357  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 119
Target Start/End: Complemental strand, 47207936 - 47207894
Alignment:
Q  77 accaagtaatcatctcttaattgatcatacccaaatccatata 119  Q
    |||||||||||||||||||||| ||| ||||||||||||||||    
T  47207936 accaagtaatcatctcttaattcatcgtacccaaatccatata 47207894  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 121
Target Start/End: Original strand, 48170600 - 48170650
Alignment:
Q  71 gaaactaccaagtaatcatctcttaattgatcatacccaaatccatataga 121  Q
    ||||| || ||||||||||||||||| |||||||||||||| |||||||||    
T  48170600 gaaaccactaagtaatcatctcttaactgatcatacccaaaaccatataga 48170650  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 191
Target Start/End: Complemental strand, 48891380 - 48891326
Alignment:
Q  137 gaatcattaggagacaaaggtatttgtttgtaaactctagttgatggattccata 191  Q
    |||||| |||||||||||||||||||||||| || || ||| |||||||||||||    
T  48891380 gaatcaataggagacaaaggtatttgtttgtgaagtccagtggatggattccata 48891326  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 189
Target Start/End: Original strand, 49048699 - 49048743
Alignment:
Q  145 aggagacaaaggtatttgtttgtaaactctagttgatggattcca 189  Q
    ||||||||||||||||||| ||| ||||||||| |||||||||||    
T  49048699 aggagacaaaggtatttgtctgtgaactctagtggatggattcca 49048743  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 191
Target Start/End: Complemental strand, 48852631 - 48852577
Alignment:
Q  137 gaatcattaggagacaaaggtatttgtttgtaaactctagttgatggattccata 191  Q
    |||||| | |||||||||||||||||||||| |||||  || |||||||||||||    
T  48852631 gaatcaatgggagacaaaggtatttgtttgtgaactccggtggatggattccata 48852577  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 191
Target Start/End: Complemental strand, 48898682 - 48898633
Alignment:
Q  142 attaggagacaaaggtatttgtttgtaaactctagttgatggattccata 191  Q
    |||||||||||||||||||||||||| | |||  || |||||||||||||    
T  48898682 attaggagacaaaggtatttgtttgtgagctccggtggatggattccata 48898633  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 193
Target Start/End: Original strand, 37827109 - 37827157
Alignment:
Q  145 aggagacaaaggtatttgtttgtaaactctagttgatggattccatatg 193  Q
    ||||||||| ||||||||||||| || || ||| |||||||||||||||    
T  37827109 aggagacaagggtatttgtttgtgaaatccagtggatggattccatatg 37827157  T

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Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 142 - 239
Target Start/End: Complemental strand, 21015769 - 21015672
Alignment:
Q  142 attaggagacaaaggtatttgtttgtaaactctagttgatggattccatatgaataggtctggatcattgtgcagaaatataaatcctctacacgaac 239  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||||| | | | || || ||||| ||||| ||||||||| |||||||| ||||    
T  21015769 attaggagacaaaggtatttgtttgtgaactctagtggatggattccataggtagatgtttgaatcatggtgcaaaaatataaaccctctacatgaac 21015672  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 193
Target Start/End: Original strand, 47452022 - 47452070
Alignment:
Q  145 aggagacaaaggtatttgtttgtaaactctagttgatggattccatatg 193  Q
    ||||| ||||||||||||||||| ||||| ||| |||||||||||||||    
T  47452022 aggaggcaaaggtatttgtttgtgaactccagtggatggattccatatg 47452070  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 77 - 124
Target Start/End: Original strand, 11005997 - 11006044
Alignment:
Q  77 accaagtaatcatctcttaattgatcatacccaaatccatatagacaa 124  Q
    |||||||||||||||||| | || ||||||||||| ||||||||||||    
T  11005997 accaagtaatcatctcttgaatggtcatacccaaaaccatatagacaa 11006044  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 77 - 124
Target Start/End: Original strand, 11015560 - 11015607
Alignment:
Q  77 accaagtaatcatctcttaattgatcatacccaaatccatatagacaa 124  Q
    |||||||||||||||||||| || ||||||||||| ||||| ||||||    
T  11015560 accaagtaatcatctcttaaatggtcatacccaaaaccatacagacaa 11015607  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 77 - 124
Target Start/End: Original strand, 11024572 - 11024619
Alignment:
Q  77 accaagtaatcatctcttaattgatcatacccaaatccatatagacaa 124  Q
    |||||||||||||||||| | || ||||||||||| ||||||||||||    
T  11024572 accaagtaatcatctcttgaatggtcatacccaaaaccatatagacaa 11024619  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 193
Target Start/End: Complemental strand, 48883758 - 48883710
Alignment:
Q  145 aggagacaaaggtatttgtttgtaaactctagttgatggattccatatg 193  Q
    ||||||||||||||||||||||| || || |||  ||||||||||||||    
T  48883758 aggagacaaaggtatttgtttgtgaaatccagtgtatggattccatatg 48883710  T

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