View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13037_low_29 (Length: 339)

Name: NF13037_low_29
Description: NF13037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13037_low_29
NF13037_low_29
[»] chr3 (19 HSPs)
chr3 (71-205)||(54574565-54574692)
chr3 (1-44)||(54574499-54574542)
chr3 (62-104)||(42772046-42772088)
chr3 (71-108)||(37102348-37102385)
chr3 (62-106)||(24560217-24560261)
chr3 (62-106)||(34641190-34641234)
chr3 (72-108)||(41039948-41039984)
chr3 (72-103)||(6803411-6803442)
chr3 (71-106)||(21773782-21773817)
chr3 (62-108)||(28582709-28582755)
chr3 (74-108)||(34641000-34641034)
chr3 (64-102)||(55428581-55428619)
chr3 (4-45)||(651793-651834)
chr3 (65-106)||(24253721-24253762)
chr3 (73-110)||(24560428-24560465)
chr3 (62-106)||(5903549-5903593)
chr3 (63-103)||(18654802-18654842)
chr3 (74-110)||(30200094-30200130)
chr3 (62-106)||(44412361-44412405)
[»] chr2 (20 HSPs)
chr2 (62-111)||(17379841-17379890)
chr2 (62-108)||(35736173-35736219)
chr2 (62-109)||(17334012-17334059)
chr2 (62-108)||(22356204-22356250)
chr2 (66-108)||(31795968-31796010)
chr2 (73-106)||(31061359-31061392)
chr2 (59-104)||(36046398-36046443)
chr2 (71-108)||(36347750-36347787)
chr2 (62-106)||(23748295-23748339)
chr2 (64-108)||(39732930-39732974)
chr2 (71-110)||(40022359-40022398)
chr2 (63-109)||(887311-887356)
chr2 (71-117)||(2380981-2381027)
chr2 (62-108)||(8554451-8554497)
chr2 (62-104)||(9426987-9427029)
chr2 (72-106)||(17380051-17380085)
chr2 (64-106)||(34187575-34187617)
chr2 (62-108)||(42296503-42296549)
chr2 (62-111)||(41778768-41778817)
chr2 (62-106)||(35736387-35736431)
[»] chr6 (16 HSPs)
chr6 (62-106)||(9721138-9721182)
chr6 (62-106)||(23090995-23091039)
chr6 (62-106)||(14515473-14515517)
chr6 (62-110)||(14515671-14515719)
chr6 (68-106)||(4097235-4097273)
chr6 (64-106)||(10818229-10818271)
chr6 (62-103)||(9719034-9719075)
chr6 (71-108)||(15323223-15323260)
chr6 (71-108)||(15353362-15353399)
chr6 (74-110)||(1300625-1300661)
chr6 (62-106)||(30487306-30487350)
chr6 (62-109)||(12811180-12811227)
chr6 (64-106)||(9051734-9051776)
chr6 (62-103)||(19278237-19278278)
chr6 (77-110)||(31798914-31798947)
chr6 (72-108)||(21607054-21607090)
[»] chr5 (29 HSPs)
chr5 (62-110)||(14245246-14245294)
chr5 (62-108)||(16938477-16938523)
chr5 (62-110)||(5688590-5688638)
chr5 (62-106)||(13634711-13634755)
chr5 (62-106)||(14245088-14245132)
chr5 (62-106)||(15986824-15986868)
chr5 (62-105)||(13634911-13634954)
chr5 (62-104)||(7544336-7544378)
chr5 (66-104)||(34980812-34980850)
chr5 (63-108)||(10476229-10476274)
chr5 (62-115)||(15986615-15986668)
chr5 (62-111)||(26414888-26414937)
chr5 (62-102)||(2550552-2550592)
chr5 (62-106)||(7544136-7544180)
chr5 (72-104)||(8551628-8551660)
chr5 (66-106)||(20147074-20147114)
chr5 (71-111)||(40815292-40815332)
chr5 (68-103)||(14681473-14681508)
chr5 (66-109)||(40305667-40305710)
chr5 (63-106)||(40305866-40305909)
chr5 (62-104)||(1658013-1658055)
chr5 (71-108)||(10650623-10650660)
chr5 (4-37)||(22022920-22022953)
chr5 (74-106)||(9856890-9856922)
chr5 (62-106)||(10204576-10204620)
chr5 (62-106)||(11436939-11436983)
chr5 (62-106)||(12035936-12035980)
chr5 (63-103)||(12600703-12600743)
chr5 (74-110)||(22023571-22023607)
[»] chr4 (29 HSPs)
chr4 (62-110)||(44145769-44145817)
chr4 (62-108)||(49735692-49735738)
chr4 (62-108)||(54320634-54320680)
chr4 (62-106)||(49735468-49735512)
chr4 (62-110)||(54935269-54935317)
chr4 (62-106)||(56135749-56135793)
chr4 (62-109)||(46007901-46007948)
chr4 (74-108)||(4437626-4437660)
chr4 (62-108)||(37711323-37711369)
chr4 (63-108)||(26166935-26166980)
chr4 (73-114)||(45741882-45741923)
chr4 (65-106)||(54935067-54935108)
chr4 (66-106)||(1968563-1968603)
chr4 (62-106)||(31348521-31348565)
chr4 (62-106)||(37711138-37711182)
chr4 (66-109)||(27775580-27775623)
chr4 (62-109)||(47433909-47433956)
chr4 (72-106)||(29798288-29798322)
chr4 (74-108)||(41174354-41174388)
chr4 (64-106)||(41174547-41174589)
chr4 (4-45)||(36151638-36151679)
chr4 (65-106)||(53260718-53260759)
chr4 (63-103)||(5731032-5731072)
chr4 (62-106)||(6938447-6938491)
chr4 (62-106)||(7977697-7977741)
chr4 (62-106)||(21695088-21695132)
chr4 (76-108)||(22920979-22921011)
chr4 (76-108)||(22970788-22970820)
chr4 (66-106)||(54320435-54320475)
[»] chr1 (27 HSPs)
chr1 (62-110)||(40094929-40094977)
chr1 (62-109)||(30010329-30010376)
chr1 (62-106)||(26324014-26324058)
chr1 (71-110)||(33643264-33643303)
chr1 (71-109)||(26941042-26941080)
chr1 (62-99)||(2859132-2859169)
chr1 (66-106)||(12234010-12234050)
chr1 (62-106)||(20607417-20607461)
chr1 (62-106)||(41498404-41498448)
chr1 (62-106)||(51303384-51303428)
chr1 (66-109)||(20607220-20607263)
chr1 (62-104)||(12234210-12234252)
chr1 (63-109)||(20576130-20576176)
chr1 (62-108)||(35349662-35349708)
chr1 (62-108)||(38509892-38509938)
chr1 (62-108)||(40709290-40709336)
chr1 (71-108)||(525309-525346)
chr1 (71-108)||(1085699-1085736)
chr1 (62-107)||(2858931-2858976)
chr1 (63-108)||(32951519-32951564)
chr1 (62-103)||(38510094-38510135)
chr1 (72-108)||(2470728-2470764)
chr1 (71-103)||(2470934-2470966)
chr1 (76-108)||(28770935-28770967)
chr1 (62-106)||(30010532-30010576)
chr1 (62-102)||(35512997-35513037)
chr1 (62-106)||(35927814-35927858)
[»] chr7 (28 HSPs)
chr7 (63-106)||(28074103-28074146)
chr7 (62-108)||(28074308-28074354)
chr7 (62-110)||(34228519-34228567)
chr7 (62-110)||(36267549-36267597)
chr7 (62-106)||(36267753-36267797)
chr7 (62-106)||(37925841-37925885)
chr7 (62-106)||(39856065-39856109)
chr7 (62-109)||(33519248-33519295)
chr7 (62-108)||(13770946-13770992)
chr7 (62-108)||(25887190-25887236)
chr7 (62-108)||(39646467-39646513)
chr7 (62-111)||(1051698-1051747)
chr7 (64-109)||(41496954-41496999)
chr7 (62-110)||(40282193-40282241)
chr7 (64-108)||(48881556-48881600)
chr7 (71-106)||(48881758-48881793)
chr7 (74-108)||(10315621-10315655)
chr7 (68-106)||(13425120-13425158)
chr7 (63-105)||(31571671-31571713)
chr7 (63-109)||(37620771-37620817)
chr7 (62-108)||(47390853-47390899)
chr7 (5-38)||(45940798-45940831)
chr7 (62-106)||(4833531-4833575)
chr7 (62-106)||(18231786-18231830)
chr7 (71-103)||(31364253-31364285)
chr7 (72-108)||(33655318-33655354)
chr7 (74-106)||(37417835-37417867)
chr7 (68-108)||(41008384-41008424)
[»] chr8 (22 HSPs)
chr8 (71-106)||(4247729-4247764)
chr8 (62-108)||(31543272-31543318)
chr8 (62-108)||(31738623-31738669)
chr8 (62-108)||(43732887-43732933)
chr8 (63-108)||(2248450-2248495)
chr8 (62-106)||(8815341-8815385)
chr8 (62-106)||(12022343-12022387)
chr8 (62-106)||(43732679-43732723)
chr8 (64-102)||(7394663-7394701)
chr8 (72-110)||(8815137-8815175)
chr8 (64-106)||(9718681-9718723)
chr8 (63-109)||(16024150-16024196)
chr8 (60-106)||(40633186-40633232)
chr8 (71-108)||(3726861-3726898)
chr8 (77-106)||(9933240-9933269)
chr8 (63-108)||(30365128-30365173)
chr8 (4-45)||(37923219-37923260)
chr8 (66-110)||(2481977-2482021)
chr8 (3-43)||(3726995-3727035)
chr8 (70-106)||(6315066-6315102)
chr8 (64-108)||(8671996-8672040)
chr8 (62-106)||(41103504-41103548)
[»] scaffold0096 (1 HSPs)
scaffold0096 (62-108)||(6582-6628)
[»] scaffold0012 (1 HSPs)
scaffold0012 (74-109)||(184608-184643)
[»] scaffold0198 (1 HSPs)
scaffold0198 (63-103)||(3150-3190)
[»] scaffold0071 (1 HSPs)
scaffold0071 (72-108)||(52894-52930)
[»] scaffold0067 (1 HSPs)
scaffold0067 (62-106)||(39390-39434)
[»] scaffold0026 (1 HSPs)
scaffold0026 (63-103)||(1175-1215)


Alignment Details
Target: chr3 (Bit Score: 93; Significance: 3e-45; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 71 - 205
Target Start/End: Original strand, 54574565 - 54574692
Alignment:
Q  71 ccttcccctcctaaaccttcaatccaaacacaccctaagataaacaaagcctgatcccgttttaattatatagctttaaaacctactttaaatcttcaat 170  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||       |||    
T  54574565 ccttcccttcctaaaccctcaatccaaacacaccctaagataaacaaagcctgatcccgtttttattatatagctttaaaacctacttta-------aat 54574657  T
Q  171 gttggtttcacacccctaagtttaaccctttgaca 205  Q
    |||||||||||||| ||||||||||||||||||||    
T  54574658 gttggtttcacacctctaagtttaaccctttgaca 54574692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 54574499 - 54574542
Alignment:
Q  1 acgcttaatttattttagaaaaatgtgttatatagtctttaatt 44  Q
    ||||||||||||||||||||||| |||||||||||||| |||||    
T  54574499 acgcttaatttattttagaaaaacgtgttatatagtctgtaatt 54574542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 104
Target Start/End: Complemental strand, 42772088 - 42772046
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaacacacc 104  Q
    |||||||| |||||||||| |||||||||||||||||||||||    
T  42772088 cctcccctcccttcccctcttaaaccttcaatccaaacacacc 42772046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 71 - 108
Target Start/End: Original strand, 37102348 - 37102385
Alignment:
Q  71 ccttcccctcctaaaccttcaatccaaacacaccctaa 108  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  37102348 ccttcccctcctaaaccctcaatccaaacacaccctaa 37102385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 106
Target Start/End: Complemental strand, 24560261 - 24560217
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaacacaccct 106  Q
    |||||||| ||||||||||||||||| | ||||||||||||||||    
T  24560261 cctcccctcccttcccctcctaaacccttaatccaaacacaccct 24560217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 106
Target Start/End: Original strand, 34641190 - 34641234
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaacacaccct 106  Q
    |||||||| ||||||||||||||||| || |||||||||||||||    
T  34641190 cctcccctcccttcccctcctaaaccctccatccaaacacaccct 34641234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 108
Target Start/End: Complemental strand, 41039984 - 41039948
Alignment:
Q  72 cttcccctcctaaaccttcaatccaaacacaccctaa 108  Q
    ||||||||||||||||||| |||||||||||||||||    
T  41039984 cttcccctcctaaaccttccatccaaacacaccctaa 41039948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 72 - 103
Target Start/End: Original strand, 6803411 - 6803442
Alignment:
Q  72 cttcccctcctaaaccttcaatccaaacacac 103  Q
    ||||||||||||||||||||||||||||||||    
T  6803411 cttcccctcctaaaccttcaatccaaacacac 6803442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 71 - 106
Target Start/End: Complemental strand, 21773817 - 21773782
Alignment:
Q  71 ccttcccctcctaaaccttcaatccaaacacaccct 106  Q
    |||||||||||||||||||||||||||||| |||||    
T  21773817 ccttcccctcctaaaccttcaatccaaacataccct 21773782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 108
Target Start/End: Original strand, 28582709 - 28582755
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaacacaccctaa 108  Q
    |||||||| ||||||||||||||| | ||| ||||||||||||||||    
T  28582709 cctcccctcccttcccctcctaaatcctcagtccaaacacaccctaa 28582755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 108
Target Start/End: Complemental strand, 34641034 - 34641000
Alignment:
Q  74 tcccctcctaaaccttcaatccaaacacaccctaa 108  Q
    |||||||||||||| ||||||||||||||||||||    
T  34641034 tcccctcctaaaccctcaatccaaacacaccctaa 34641000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 102
Target Start/End: Original strand, 55428581 - 55428619
Alignment:
Q  64 tccccttccttcccctcctaaaccttcaatccaaacaca 102  Q
    |||||| ||||||||||||||||| ||||||||||||||    
T  55428581 tcccctcccttcccctcctaaaccctcaatccaaacaca 55428619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 45
Target Start/End: Complemental strand, 651834 - 651793
Alignment:
Q  4 cttaatttattttagaaaaatgtgttatatagtctttaattt 45  Q
    ||||||||||||||||||||  ||||||||||||| ||||||    
T  651834 cttaatttattttagaaaaacatgttatatagtctataattt 651793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 106
Target Start/End: Complemental strand, 24253762 - 24253721
Alignment:
Q  65 ccccttccttcccctcctaaaccttcaatccaaacacaccct 106  Q
    ||||| |||| |||||||||||| ||||||||||||||||||    
T  24253762 cccctccctttccctcctaaaccctcaatccaaacacaccct 24253721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 110
Target Start/End: Original strand, 24560428 - 24560465
Alignment:
Q  73 ttcccctcctaaaccttcaatccaaacacaccctaaga 110  Q
    ||||||||||||||| || |||||||||||||||||||    
T  24560428 ttcccctcctaaaccctccatccaaacacaccctaaga 24560465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 106
Target Start/End: Complemental strand, 5903593 - 5903549
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaacacaccct 106  Q
    |||||||| |||||||||| |||| | ||||||||||||||||||    
T  5903593 cctcccctgccttcccctcttaaatcctcaatccaaacacaccct 5903549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 103
Target Start/End: Original strand, 18654802 - 18654842
Alignment:
Q  63 ctccccttccttcccctcctaaaccttcaatccaaacacac 103  Q
    ||||||| ||||||||||||||||| ||||| |||||||||    
T  18654802 ctcccctcccttcccctcctaaaccctcaattcaaacacac 18654842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 110
Target Start/End: Complemental strand, 30200130 - 30200094
Alignment:
Q  74 tcccctcctaaaccttcaatccaaacacaccctaaga 110  Q
    |||||||||||||| || |||||||||||||||||||    
T  30200130 tcccctcctaaaccctccatccaaacacaccctaaga 30200094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 106
Target Start/End: Complemental strand, 44412405 - 44412361
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaacacaccct 106  Q
    ||||||||  |||||||||||||||| ||||| ||||||||||||    
T  44412405 cctcccctctcttcccctcctaaaccctcaattcaaacacaccct 44412361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 62 - 111
Target Start/End: Complemental strand, 17379890 - 17379841
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaacacaccctaagat 111  Q
    |||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  17379890 cctcccctcccttcccctcctaaaccctcaatccaaacacaccctaagat 17379841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 62 - 108
Target Start/End: Complemental strand, 35736219 - 35736173
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaacacaccctaa 108  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||    
T  35736219 cctcccctcccttcccctcctaaaccctcaatccaaacacaccctaa 35736173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 62 - 109
Target Start/End: Original strand, 17334012 - 17334059
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaacacaccctaag 109  Q
    |||||||||||||||||||||||||| ||||| |||| ||||||||||    
T  17334012 cctccccttccttcccctcctaaaccctcaattcaaaaacaccctaag 17334059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 108
Target Start/End: Original strand, 22356204 - 22356250
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaacacaccctaa 108  Q
    |||||||| ||||||||||||||| | ||||||||||||||||||||    
T  22356204 cctcccctcccttcccctcctaaatcctcaatccaaacacaccctaa 22356250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 108
Target Start/End: Original strand, 31795968 - 31796010
Alignment:
Q  66 cccttccttcccctcctaaaccttcaatccaaacacaccctaa 108  Q
    |||| |||||||||||||||||||||||||||||| |||||||    
T  31795968 ccctcccttcccctcctaaaccttcaatccaaacaaaccctaa 31796010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 73 - 106
Target Start/End: Complemental strand, 31061392 - 31061359
Alignment:
Q  73 ttcccctcctaaaccttcaatccaaacacaccct 106  Q
    ||||||||||||||||||||||||||||||||||    
T  31061392 ttcccctcctaaaccttcaatccaaacacaccct 31061359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 59 - 104
Target Start/End: Original strand, 36046398 - 36046443
Alignment:
Q  59 aaacctccccttccttcccctcctaaaccttcaatccaaacacacc 104  Q
    ||||||||||| |||||||||| |||||| ||||||||||||||||    
T  36046398 aaacctcccctcccttcccctcataaaccctcaatccaaacacacc 36046443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 71 - 108
Target Start/End: Original strand, 36347750 - 36347787
Alignment:
Q  71 ccttcccctcctaaaccttcaatccaaacacaccctaa 108  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  36347750 ccttcccctcctaaaccctcaatccaaacacaccctaa 36347787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 106
Target Start/End: Original strand, 23748295 - 23748339
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaacacaccct 106  Q
    |||||||| ||||||||||||||||| || |||||||||||||||    
T  23748295 cctcccctcccttcccctcctaaaccctccatccaaacacaccct 23748339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 108
Target Start/End: Original strand, 39732930 - 39732974
Alignment:
Q  64 tccccttccttcccctcctaaaccttcaatccaaacacaccctaa 108  Q
    |||| ||||||||||||  ||||||||||||||||||||||||||    
T  39732930 tccctttccttcccctctcaaaccttcaatccaaacacaccctaa 39732974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 71 - 110
Target Start/End: Complemental strand, 40022398 - 40022359
Alignment:
Q  71 ccttcccctcctaaaccttcaatccaaacacaccctaaga 110  Q
    |||| |||||||||||| ||||||||||||||||||||||    
T  40022398 ccttaccctcctaaaccctcaatccaaacacaccctaaga 40022359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 109
Target Start/End: Original strand, 887311 - 887356
Alignment:
Q  63 ctccccttccttcccctcctaaaccttcaatccaaacacaccctaag 109  Q
    ||||||| |||||||||||||||||||| ||||| ||||||||||||    
T  887311 ctcccctcccttcccctcctaaaccttc-atccagacacaccctaag 887356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 117
Target Start/End: Complemental strand, 2381027 - 2380981
Alignment:
Q  71 ccttcccctcctaaaccttcaatccaaacacaccctaagataaacaa 117  Q
    ||||||||||||||||| || ||||||||||| ||||||| ||||||    
T  2381027 ccttcccctcctaaaccctctatccaaacacatcctaagagaaacaa 2380981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 108
Target Start/End: Original strand, 8554451 - 8554497
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaacacaccctaa 108  Q
    |||||||| | |||||||| ||||| |||||||||||||||||||||    
T  8554451 cctcccctccattcccctcttaaactttcaatccaaacacaccctaa 8554497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 104
Target Start/End: Complemental strand, 9427029 - 9426987
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaacacacc 104  Q
    |||| ||| |||||||||||||||| |||||||||||||||||    
T  9427029 cctctcctcccttcccctcctaaactttcaatccaaacacacc 9426987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 106
Target Start/End: Original strand, 17380051 - 17380085
Alignment:
Q  72 cttcccctcctaaaccttcaatccaaacacaccct 106  Q
    |||||||||||||||| ||||||||||||||||||    
T  17380051 cttcccctcctaaaccctcaatccaaacacaccct 17380085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 106
Target Start/End: Complemental strand, 34187617 - 34187575
Alignment:
Q  64 tccccttccttcccctcctaaaccttcaatccaaacacaccct 106  Q
    ||||||||||||| |||||||||  ||||||||||||||||||    
T  34187617 tccccttccttccactcctaaactctcaatccaaacacaccct 34187575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 108
Target Start/End: Original strand, 42296503 - 42296549
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaacacaccctaa 108  Q
    |||| ||| |||||||||||||| || ||||||||||||||||||||    
T  42296503 cctctcctcccttcccctcctaatccctcaatccaaacacaccctaa 42296549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 111
Target Start/End: Complemental strand, 41778817 - 41778768
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaacacaccctaagat 111  Q
    |||||||| |||| |||| ||||||| |||||||||||||||||| ||||    
T  41778817 cctcccctccctttcccttctaaaccctcaatccaaacacacccttagat 41778768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 106
Target Start/End: Original strand, 35736387 - 35736431
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaacacaccct 106  Q
    |||||||| ||||| ||||||||||| || |||||||||||||||    
T  35736387 cctcccctcccttcacctcctaaaccctccatccaaacacaccct 35736431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 62 - 106
Target Start/End: Complemental strand, 9721182 - 9721138
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaacacaccct 106  Q
    |||||||| ||||||||||||||||||||||||||||||||||||    
T  9721182 cctcccctcccttcccctcctaaaccttcaatccaaacacaccct 9721138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 62 - 106
Target Start/End: Complemental strand, 23091039 - 23090995
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaacacaccct 106  Q
    |||||||| ||||||||||||||||||||||||||||||||||||    
T  23091039 cctcccctcccttcccctcctaaaccttcaatccaaacacaccct 23090995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 62 - 106
Target Start/End: Complemental strand, 14515517 - 14515473
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaacacaccct 106  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||    
T  14515517 cctcccctcccttcccctcctaaaccctcaatccaaacacaccct 14515473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 62 - 110
Target Start/End: Original strand, 14515671 - 14515719
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaacacaccctaaga 110  Q
    |||||| ||||||||||||||||||| || |||||||||||||||||||    
T  14515671 cctccctttccttcccctcctaaaccctccatccaaacacaccctaaga 14515719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 106
Target Start/End: Complemental strand, 4097273 - 4097235
Alignment:
Q  68 cttccttcccctcctaaaccttcaatccaaacacaccct 106  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  4097273 cttccttcccctcctaaaccctcaatccaaacacaccct 4097235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 106
Target Start/End: Complemental strand, 10818271 - 10818229
Alignment:
Q  64 tccccttccttcccctcctaaaccttcaatccaaacacaccct 106  Q
    |||||| ||||||||||||||||| ||||||||||||||||||    
T  10818271 tcccctcccttcccctcctaaaccctcaatccaaacacaccct 10818229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 62 - 103
Target Start/End: Complemental strand, 9719075 - 9719034
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaacacac 103  Q
    |||||||| ||||||||||||||||| |||||||||||||||    
T  9719075 cctcccctcccttcccctcctaaaccctcaatccaaacacac 9719034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 71 - 108
Target Start/End: Complemental strand, 15323260 - 15323223
Alignment:
Q  71 ccttcccctcctaaaccttcaatccaaacacaccctaa 108  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  15323260 ccttcccctcctaaaccctcaatccaaacacaccctaa 15323223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 71 - 108
Target Start/End: Complemental strand, 15353399 - 15353362
Alignment:
Q  71 ccttcccctcctaaaccttcaatccaaacacaccctaa 108  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  15353399 ccttcccctcctaaaccctcaatccaaacacaccctaa 15353362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 110
Target Start/End: Complemental strand, 1300661 - 1300625
Alignment:
Q  74 tcccctcctaaaccttcaatccaaacacaccctaaga 110  Q
    |||||||||||||| ||||||||||||||||||||||    
T  1300661 tcccctcctaaaccctcaatccaaacacaccctaaga 1300625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 106
Target Start/End: Complemental strand, 30487350 - 30487306
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaacacaccct 106  Q
    |||||||| ||||||||||||||||| || |||||||||||||||    
T  30487350 cctcccctcccttcccctcctaaaccctccatccaaacacaccct 30487306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 62 - 109
Target Start/End: Original strand, 12811180 - 12811227
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaacacaccctaag 109  Q
    ||||||||  |||||| ||||||||| |||||||||||||||||||||    
T  12811180 cctcccctctcttcccatcctaaaccctcaatccaaacacaccctaag 12811227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 106
Target Start/End: Original strand, 9051734 - 9051776
Alignment:
Q  64 tccccttccttcccctcctaaaccttcaatccaaacacaccct 106  Q
    |||||| |||||||||| |||||| ||||||||||||||||||    
T  9051734 tcccctcccttcccctcttaaaccctcaatccaaacacaccct 9051776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 103
Target Start/End: Original strand, 19278237 - 19278278
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaacacac 103  Q
    |||||||| ||||||||||||||||  |||||||||||||||    
T  19278237 cctcccctcccttcccctcctaaactctcaatccaaacacac 19278278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 110
Target Start/End: Complemental strand, 31798947 - 31798914
Alignment:
Q  77 cctcctaaaccttcaatccaaacacaccctaaga 110  Q
    ||||||||||| ||||||||||||||||||||||    
T  31798947 cctcctaaaccctcaatccaaacacaccctaaga 31798914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 108
Target Start/End: Original strand, 21607054 - 21607090
Alignment:
Q  72 cttcccctcctaaaccttcaatccaaacacaccctaa 108  Q
    |||||||||||||||| ||||||||||||||| ||||    
T  21607054 cttcccctcctaaaccctcaatccaaacacactctaa 21607090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 62 - 110
Target Start/End: Original strand, 14245246 - 14245294
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaacacaccctaaga 110  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  14245246 cctcccctcccttcccctcctaaaccctcaatccaaacacaccctaaga 14245294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 62 - 108
Target Start/End: Complemental strand, 16938523 - 16938477
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaacacaccctaa 108  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||    
T  16938523 cctcccctcccttcccctcctaaaccctcaatccaaacacaccctaa 16938477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 62 - 110
Target Start/End: Original strand, 5688590 - 5688638
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaacacaccctaaga 110  Q
    |||||| | ||||||||||||||||| ||||||||||||||||||||||    
T  5688590 cctcccttcccttcccctcctaaaccctcaatccaaacacaccctaaga 5688638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 62 - 106
Target Start/End: Complemental strand, 13634755 - 13634711
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaacacaccct 106  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||    
T  13634755 cctcccctcccttcccctcctaaaccctcaatccaaacacaccct 13634711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 62 - 106
Target Start/End: Complemental strand, 14245132 - 14245088
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaacacaccct 106  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||    
T  14245132 cctcccctcccttcccctcctaaaccctcaatccaaacacaccct 14245088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 62 - 106
Target Start/End: Original strand, 15986824 - 15986868
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaacacaccct 106  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||    
T  15986824 cctcctcttccttcccctcctaaaccctcaatccaaacacaccct 15986868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 62 - 105
Target Start/End: Original strand, 13634911 - 13634954
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaacacaccc 105  Q
    |||||||| ||||||||||||||||| |||||||||||||||||    
T  13634911 cctcccctcccttcccctcctaaaccctcaatccaaacacaccc 13634954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 104
Target Start/End: Original strand, 7544336 - 7544378
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaacacacc 104  Q
    |||||||||||||||||||||||||| || |||||||||||||    
T  7544336 cctccccttccttcccctcctaaaccctccatccaaacacacc 7544378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 104
Target Start/End: Complemental strand, 34980850 - 34980812
Alignment:
Q  66 cccttccttcccctcctaaaccttcaatccaaacacacc 104  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  34980850 ccctcccttcccctcctaaaccttcaatccaaacacacc 34980812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 63 - 108
Target Start/End: Original strand, 10476229 - 10476274
Alignment:
Q  63 ctccccttccttcccctcctaaaccttcaatccaaacacaccctaa 108  Q
    ||||||| ||||||||||||||||| || |||||||||||||||||    
T  10476229 ctcccctcccttcccctcctaaaccctccatccaaacacaccctaa 10476274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 62 - 115
Target Start/End: Complemental strand, 15986668 - 15986615
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaacacaccctaagataaac 115  Q
    |||||||| ||||||||||||||||| ||  |||||||||||||||||| ||||    
T  15986668 cctcccctcccttcccctcctaaaccctctttccaaacacaccctaagagaaac 15986615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 62 - 111
Target Start/End: Complemental strand, 26414937 - 26414888
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaacacaccctaagat 111  Q
    |||||||| ||||| ||||||||||| |||||||||||||||||| ||||    
T  26414937 cctcccctcccttctcctcctaaaccctcaatccaaacacacccttagat 26414888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 102
Target Start/End: Original strand, 2550552 - 2550592
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaacaca 102  Q
    |||||||| ||||||||||||||||| ||||||||||||||    
T  2550552 cctcccctcccttcccctcctaaaccctcaatccaaacaca 2550592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 106
Target Start/End: Complemental strand, 7544180 - 7544136
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaacacaccct 106  Q
    |||||||| ||||||| ||||||||| ||||||||||||||||||    
T  7544180 cctcccctcccttcccttcctaaaccctcaatccaaacacaccct 7544136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 104
Target Start/End: Original strand, 8551628 - 8551660
Alignment:
Q  72 cttcccctcctaaaccttcaatccaaacacacc 104  Q
    |||||||||||||||||||||||||||||||||    
T  8551628 cttcccctcctaaaccttcaatccaaacacacc 8551660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 106
Target Start/End: Original strand, 20147074 - 20147114
Alignment:
Q  66 cccttccttcccctcctaaaccttcaatccaaacacaccct 106  Q
    |||| ||||||||||||||||| ||||||||||||||||||    
T  20147074 ccctcccttcccctcctaaaccctcaatccaaacacaccct 20147114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 111
Target Start/End: Complemental strand, 40815332 - 40815292
Alignment:
Q  71 ccttcccctcctaaaccttcaatccaaacacaccctaagat 111  Q
    ||||||||||||||| |||||||||||||||||||| ||||    
T  40815332 ccttcccctcctaaatcttcaatccaaacacacccttagat 40815292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 68 - 103
Target Start/End: Complemental strand, 14681508 - 14681473
Alignment:
Q  68 cttccttcccctcctaaaccttcaatccaaacacac 103  Q
    |||||||||||||||||||| |||||||||||||||    
T  14681508 cttccttcccctcctaaaccctcaatccaaacacac 14681473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 66 - 109
Target Start/End: Complemental strand, 40305710 - 40305667
Alignment:
Q  66 cccttccttcccctcctaaaccttcaatccaaacacaccctaag 109  Q
    |||| ||||||||||||||||| || ||||||||||||||||||    
T  40305710 ccctcccttcccctcctaaaccctccatccaaacacaccctaag 40305667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 63 - 106
Target Start/End: Original strand, 40305866 - 40305909
Alignment:
Q  63 ctccccttccttcccctcctaaaccttcaatccaaacacaccct 106  Q
    ||||||| ||||| ||||||||||| ||||||||||||||||||    
T  40305866 ctcccctcccttctcctcctaaaccctcaatccaaacacaccct 40305909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 104
Target Start/End: Original strand, 1658013 - 1658055
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaacacacc 104  Q
    |||||||| ||||||||||||||||| || |||||||||||||    
T  1658013 cctcccctcccttcccctcctaaaccctccatccaaacacacc 1658055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 108
Target Start/End: Original strand, 10650623 - 10650660
Alignment:
Q  71 ccttcccctcctaaaccttcaatccaaacacaccctaa 108  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  10650623 ccttcccctcccaaactttcaatccaaacacaccctaa 10650660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 37
Target Start/End: Complemental strand, 22022953 - 22022920
Alignment:
Q  4 cttaatttattttagaaaaatgtgttatatagtc 37  Q
    ||||||||||||||||||||| ||||||||||||    
T  22022953 cttaatttattttagaaaaatatgttatatagtc 22022920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 106
Target Start/End: Complemental strand, 9856922 - 9856890
Alignment:
Q  74 tcccctcctaaaccttcaatccaaacacaccct 106  Q
    |||||||||||||| ||||||||||||||||||    
T  9856922 tcccctcctaaaccctcaatccaaacacaccct 9856890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 106
Target Start/End: Complemental strand, 10204620 - 10204576
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaacacaccct 106  Q
    |||| ||| ||||||||||||||||| || |||||||||||||||    
T  10204620 cctcacctcccttcccctcctaaaccctcgatccaaacacaccct 10204576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 106
Target Start/End: Complemental strand, 11436983 - 11436939
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaacacaccct 106  Q
    ||||| || ||||||||||||||||| ||||||||||||| ||||    
T  11436983 cctcctctcccttcccctcctaaaccctcaatccaaacacgccct 11436939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 106
Target Start/End: Complemental strand, 12035980 - 12035936
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaacacaccct 106  Q
    ||||| || ||||||||||||||||| || |||||||||||||||    
T  12035980 cctcctctcccttcccctcctaaaccatctatccaaacacaccct 12035936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 103
Target Start/End: Original strand, 12600703 - 12600743
Alignment:
Q  63 ctccccttccttcccctcctaaaccttcaatccaaacacac 103  Q
    |||||||  |||||||||||||||||| |||||||||||||    
T  12600703 ctcccctctcttcccctcctaaaccttaaatccaaacacac 12600743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 110
Target Start/End: Original strand, 22023571 - 22023607
Alignment:
Q  74 tcccctcctaaaccttcaatccaaacacaccctaaga 110  Q
    |||||||||||||| || |||||||||||||||||||    
T  22023571 tcccctcctaaaccctccatccaaacacaccctaaga 22023607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 62 - 110
Target Start/End: Complemental strand, 44145817 - 44145769
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaacacaccctaaga 110  Q
    |||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  44145817 cctcccctcccttcccctcctaaaccttgaatccaaacacaccctaaga 44145769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 62 - 108
Target Start/End: Original strand, 49735692 - 49735738
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaacacaccctaa 108  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||    
T  49735692 cctcccctcccttcccctcctaaaccctcaatccaaacacaccctaa 49735738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 62 - 108
Target Start/End: Original strand, 54320634 - 54320680
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaacacaccctaa 108  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||    
T  54320634 cctcccctcccttcccctcctaaaccctcaatccaaacacaccctaa 54320680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 62 - 106
Target Start/End: Complemental strand, 49735512 - 49735468
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaacacaccct 106  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||    
T  49735512 cctcccctcccttcccctcctaaaccctcaatccaaacacaccct 49735468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 62 - 110
Target Start/End: Original strand, 54935269 - 54935317
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaacacaccctaaga 110  Q
    |||||||| ||||||||||||||||| || |||||||||||||||||||    
T  54935269 cctcccctcccttcccctcctaaaccctccatccaaacacaccctaaga 54935317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 62 - 106
Target Start/End: Complemental strand, 56135793 - 56135749
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaacacaccct 106  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||    
T  56135793 cctcccctcccttcccctcctaaaccctcaatccaaacacaccct 56135749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 62 - 109
Target Start/End: Original strand, 46007901 - 46007948
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaacacaccctaag 109  Q
    |||||||| ||||||||||||||||| ||||||||||||||| |||||    
T  46007901 cctcccctcccttcccctcctaaaccctcaatccaaacacactctaag 46007948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 108
Target Start/End: Original strand, 4437626 - 4437660
Alignment:
Q  74 tcccctcctaaaccttcaatccaaacacaccctaa 108  Q
    |||||||||||||||||||||||||||||||||||    
T  4437626 tcccctcctaaaccttcaatccaaacacaccctaa 4437660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 108
Target Start/End: Original strand, 37711323 - 37711369
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaacacaccctaa 108  Q
    |||||||| ||||||||||||||||| || |||||||||||||||||    
T  37711323 cctcccctcccttcccctcctaaaccctccatccaaacacaccctaa 37711369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 63 - 108
Target Start/End: Complemental strand, 26166980 - 26166935
Alignment:
Q  63 ctccccttccttcccctcctaaaccttcaatccaaacacaccctaa 108  Q
    ||||||| | ||||||||||||||| ||||||||||||||||||||    
T  26166980 ctcccctccattcccctcctaaaccctcaatccaaacacaccctaa 26166935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 45741923 - 45741882
Alignment:
Q  73 ttcccctcctaaaccttcaatccaaacacaccctaagataaa 114  Q
    ||||||||||||||| |||||||||||||||||||| |||||    
T  45741923 ttcccctcctaaaccctcaatccaaacacaccctaaaataaa 45741882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 65 - 106
Target Start/End: Complemental strand, 54935108 - 54935067
Alignment:
Q  65 ccccttccttcccctcctaaaccttcaatccaaacacaccct 106  Q
    ||||| ||||||||||||||||| ||||||||||||||||||    
T  54935108 cccctcccttcccctcctaaaccctcaatccaaacacaccct 54935067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 106
Target Start/End: Original strand, 1968563 - 1968603
Alignment:
Q  66 cccttccttcccctcctaaaccttcaatccaaacacaccct 106  Q
    |||| ||||||||||||||||| ||||||||||||||||||    
T  1968563 ccctcccttcccctcctaaaccctcaatccaaacacaccct 1968603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 106
Target Start/End: Original strand, 31348521 - 31348565
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaacacaccct 106  Q
    |||||||| ||||||||||||||||  ||||||||||||||||||    
T  31348521 cctcccctcccttcccctcctaaactctcaatccaaacacaccct 31348565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 106
Target Start/End: Complemental strand, 37711182 - 37711138
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaacacaccct 106  Q
    |||||| | ||||||||||||||||| ||||||||||||||||||    
T  37711182 cctcccttcccttcccctcctaaaccctcaatccaaacacaccct 37711138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 66 - 109
Target Start/End: Complemental strand, 27775623 - 27775580
Alignment:
Q  66 cccttccttcccctcctaaaccttcaatccaaacacaccctaag 109  Q
    ||||| |||||||||||||||| |||||||||||| ||||||||    
T  27775623 ccctttcttcccctcctaaaccctcaatccaaacaaaccctaag 27775580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 62 - 109
Target Start/End: Original strand, 47433909 - 47433956
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaacacaccctaag 109  Q
    ||||| || ||||||||||||||||| |||| ||||||||||||||||    
T  47433909 cctcctctcccttcccctcctaaaccgtcaacccaaacacaccctaag 47433956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 106
Target Start/End: Complemental strand, 29798322 - 29798288
Alignment:
Q  72 cttcccctcctaaaccttcaatccaaacacaccct 106  Q
    |||||||||||||||| ||||||||||||||||||    
T  29798322 cttcccctcctaaaccatcaatccaaacacaccct 29798288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 108
Target Start/End: Complemental strand, 41174388 - 41174354
Alignment:
Q  74 tcccctcctaaaccttcaatccaaacacaccctaa 108  Q
    |||||||||||||| ||||||||||||||||||||    
T  41174388 tcccctcctaaaccctcaatccaaacacaccctaa 41174354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 106
Target Start/End: Original strand, 41174547 - 41174589
Alignment:
Q  64 tccccttccttcccctcctaaaccttcaatccaaacacaccct 106  Q
    |||||| ||||||||||||||||| || |||||||||||||||    
T  41174547 tcccctcccttcccctcctaaaccctccatccaaacacaccct 41174589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 45
Target Start/End: Complemental strand, 36151679 - 36151638
Alignment:
Q  4 cttaatttattttagaaaaatgtgttatatagtctttaattt 45  Q
    ||||||||||||||||||||  ||||||||||||| ||||||    
T  36151679 cttaatttattttagaaaaacatgttatatagtctgtaattt 36151638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 106
Target Start/End: Complemental strand, 53260759 - 53260718
Alignment:
Q  65 ccccttccttcccctcctaaaccttcaatccaaacacaccct 106  Q
    ||||| ||||||||||||||||| || |||||||||||||||    
T  53260759 cccctcccttcccctcctaaaccctccatccaaacacaccct 53260718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 103
Target Start/End: Original strand, 5731032 - 5731072
Alignment:
Q  63 ctccccttccttcccctcctaaaccttcaatccaaacacac 103  Q
    ||||||| ||||||||||||||||| ||||| |||||||||    
T  5731032 ctcccctcccttcccctcctaaaccctcaattcaaacacac 5731072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 106
Target Start/End: Original strand, 6938447 - 6938491
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaacacaccct 106  Q
    |||||||| | |||||||| ||||||||| |||||||||||||||    
T  6938447 cctcccctccattcccctcataaaccttccatccaaacacaccct 6938491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 106
Target Start/End: Original strand, 7977697 - 7977741
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaacacaccct 106  Q
    |||||||| | |||||||| |||||| ||||||||||||||||||    
T  7977697 cctcccctcctttcccctcataaaccctcaatccaaacacaccct 7977741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 106
Target Start/End: Original strand, 21695088 - 21695132
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaacacaccct 106  Q
    ||||| ||||||||||||| ||||||  |||||||||||||||||    
T  21695088 cctccgcttccttcccctcataaacccccaatccaaacacaccct 21695132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 108
Target Start/End: Complemental strand, 22921011 - 22920979
Alignment:
Q  76 ccctcctaaaccttcaatccaaacacaccctaa 108  Q
    |||||||||||| ||||||||||||||||||||    
T  22921011 ccctcctaaaccatcaatccaaacacaccctaa 22920979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 108
Target Start/End: Original strand, 22970788 - 22970820
Alignment:
Q  76 ccctcctaaaccttcaatccaaacacaccctaa 108  Q
    |||||||||||| ||||||||||||||||||||    
T  22970788 ccctcctaaaccatcaatccaaacacaccctaa 22970820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 106
Target Start/End: Complemental strand, 54320475 - 54320435
Alignment:
Q  66 cccttccttcccctcctaaaccttcaatccaaacacaccct 106  Q
    |||| |||| |||||||||||| ||||||||||||||||||    
T  54320475 ccctccctttccctcctaaaccctcaatccaaacacaccct 54320435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 62 - 110
Target Start/End: Complemental strand, 40094977 - 40094929
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaacacaccctaaga 110  Q
    |||||||||||||||||||||||||| || |||||||||||||||||||    
T  40094977 cctccccttccttcccctcctaaaccctccatccaaacacaccctaaga 40094929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 62 - 109
Target Start/End: Complemental strand, 30010376 - 30010329
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaacacaccctaag 109  Q
    |||||||| ||||||||||||||||| |||||||||||||||||||||    
T  30010376 cctcccctcccttcccctcctaaaccctcaatccaaacacaccctaag 30010329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 62 - 106
Target Start/End: Complemental strand, 26324058 - 26324014
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaacacaccct 106  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||    
T  26324058 cctcccctcccttcccctcctaaaccctcaatccaaacacaccct 26324014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 71 - 110
Target Start/End: Complemental strand, 33643303 - 33643264
Alignment:
Q  71 ccttcccctcctaaaccttcaatccaaacacaccctaaga 110  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  33643303 ccttcccctcctaaaccttcaatctaaacacaccctaaga 33643264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 109
Target Start/End: Original strand, 26941042 - 26941080
Alignment:
Q  71 ccttcccctcctaaaccttcaatccaaacacaccctaag 109  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  26941042 ccttcccctcctaaaccctcaatccaaacacaccctaag 26941080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 62 - 99
Target Start/End: Original strand, 2859132 - 2859169
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaac 99  Q
    |||||||| |||||||||||||||||||||||||||||    
T  2859132 cctcccctcccttcccctcctaaaccttcaatccaaac 2859169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 106
Target Start/End: Complemental strand, 12234050 - 12234010
Alignment:
Q  66 cccttccttcccctcctaaaccttcaatccaaacacaccct 106  Q
    |||| ||||||||||||||||| ||||||||||||||||||    
T  12234050 ccctcccttcccctcctaaaccctcaatccaaacacaccct 12234010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 106
Target Start/End: Original strand, 20607417 - 20607461
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaacacaccct 106  Q
    |||||||| ||||||||||||||||| || |||||||||||||||    
T  20607417 cctcccctcccttcccctcctaaaccctccatccaaacacaccct 20607461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 106
Target Start/End: Complemental strand, 41498448 - 41498404
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaacacaccct 106  Q
    ||||||||  |||||||||||||||| ||||||||||||||||||    
T  41498448 cctcccctcacttcccctcctaaaccctcaatccaaacacaccct 41498404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 106
Target Start/End: Complemental strand, 51303428 - 51303384
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaacacaccct 106  Q
    |||||||| || |||||||||||||| ||||||||||||||||||    
T  51303428 cctcccctcccctcccctcctaaaccctcaatccaaacacaccct 51303384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 66 - 109
Target Start/End: Complemental strand, 20607263 - 20607220
Alignment:
Q  66 cccttccttcccctcctaaaccttcaatccaaacacaccctaag 109  Q
    |||| ||||||||||||||||| ||||| |||||||||||||||    
T  20607263 ccctcccttcccctcctaaaccctcaattcaaacacaccctaag 20607220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 104
Target Start/End: Original strand, 12234210 - 12234252
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaacacacc 104  Q
    |||||||| ||||||||||||||||| || |||||||||||||    
T  12234210 cctcccctcccttcccctcctaaaccctccatccaaacacacc 12234252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 109
Target Start/End: Complemental strand, 20576176 - 20576130
Alignment:
Q  63 ctccccttccttcccctcctaaaccttcaatccaaacacaccctaag 109  Q
    ||||||| ||||||||||||||||| || |||||||||||| |||||    
T  20576176 ctcccctcccttcccctcctaaaccctctatccaaacacactctaag 20576130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 108
Target Start/End: Original strand, 35349662 - 35349708
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaacacaccctaa 108  Q
    |||||||| |||||||||| |||||| | ||||||||||||||||||    
T  35349662 cctcccctcccttcccctcataaacccttaatccaaacacaccctaa 35349708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 108
Target Start/End: Complemental strand, 38509938 - 38509892
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaacacaccctaa 108  Q
    ||||| || ||||||||||||||||| || |||||||||||||||||    
T  38509938 cctcctctcccttcccctcctaaaccctctatccaaacacaccctaa 38509892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 108
Target Start/End: Complemental strand, 40709336 - 40709290
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaacacaccctaa 108  Q
    ||||| || |||||||||| |||||||| ||||||||||||||||||    
T  40709336 cctcctctcccttcccctcttaaaccttaaatccaaacacaccctaa 40709290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 108
Target Start/End: Original strand, 525309 - 525346
Alignment:
Q  71 ccttcccctcctaaaccttcaatccaaacacaccctaa 108  Q
    ||||||| ||||||||| ||||||||||||||||||||    
T  525309 ccttcccgtcctaaaccctcaatccaaacacaccctaa 525346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 108
Target Start/End: Original strand, 1085699 - 1085736
Alignment:
Q  71 ccttcccctcctaaaccttcaatccaaacacaccctaa 108  Q
    ||||||||||||||||| || |||||||||||||||||    
T  1085699 ccttcccctcctaaaccctctatccaaacacaccctaa 1085736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 107
Target Start/End: Complemental strand, 2858976 - 2858931
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaacacacccta 107  Q
    |||||||| |||| |||||||||||| || ||||||||||||||||    
T  2858976 cctcccctccctttccctcctaaaccctccatccaaacacacccta 2858931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 108
Target Start/End: Original strand, 32951519 - 32951564
Alignment:
Q  63 ctccccttccttcccctcctaaaccttcaatccaaacacaccctaa 108  Q
    ||||||| |||||| |||||||||  ||||||||||||||||||||    
T  32951519 ctcccctcccttcctctcctaaactctcaatccaaacacaccctaa 32951564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 103
Target Start/End: Original strand, 38510094 - 38510135
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaacacac 103  Q
    |||||||| ||||||||||||||||| | |||||||||||||    
T  38510094 cctcccctcccttcccctcctaaacccttaatccaaacacac 38510135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 108
Target Start/End: Complemental strand, 2470764 - 2470728
Alignment:
Q  72 cttcccctcctaaaccttcaatccaaacacaccctaa 108  Q
    |||||||||||||||| || |||||||||||||||||    
T  2470764 cttcccctcctaaaccctccatccaaacacaccctaa 2470728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 103
Target Start/End: Original strand, 2470934 - 2470966
Alignment:
Q  71 ccttcccctcctaaaccttcaatccaaacacac 103  Q
    ||||||||||||||||| |||||||||||||||    
T  2470934 ccttcccctcctaaaccatcaatccaaacacac 2470966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 108
Target Start/End: Original strand, 28770935 - 28770967
Alignment:
Q  76 ccctcctaaaccttcaatccaaacacaccctaa 108  Q
    ||||||||||||||| |||||||||||||||||    
T  28770935 ccctcctaaaccttccatccaaacacaccctaa 28770967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 106
Target Start/End: Original strand, 30010532 - 30010576
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaacacaccct 106  Q
    |||||||| ||||||||| ||||||| || |||||||||||||||    
T  30010532 cctcccctcccttccccttctaaaccctccatccaaacacaccct 30010576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 102
Target Start/End: Original strand, 35512997 - 35513037
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaacaca 102  Q
    |||||||| ||||||||||||||||| || |||||||||||    
T  35512997 cctcccctcccttcccctcctaaaccctccatccaaacaca 35513037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 106
Target Start/End: Complemental strand, 35927858 - 35927814
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaacacaccct 106  Q
    |||||||| | ||||||||||||| | ||||||||||||||||||    
T  35927858 cctcccctccattcccctcctaaaacctcaatccaaacacaccct 35927814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 63 - 106
Target Start/End: Complemental strand, 28074146 - 28074103
Alignment:
Q  63 ctccccttccttcccctcctaaaccttcaatccaaacacaccct 106  Q
    ||||||| ||||||||||||||||||||||||||||||||||||    
T  28074146 ctcccctcccttcccctcctaaaccttcaatccaaacacaccct 28074103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 62 - 108
Target Start/End: Original strand, 28074308 - 28074354
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaacacaccctaa 108  Q
    ||||||||||||||| |||||||||| ||||||||||||||||||||    
T  28074308 cctccccttccttcctctcctaaaccctcaatccaaacacaccctaa 28074354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 62 - 110
Target Start/End: Original strand, 34228519 - 34228567
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaacacaccctaaga 110  Q
    |||||||| ||||| ||||||||||||||||| ||||||||||||||||    
T  34228519 cctcccctcccttctcctcctaaaccttcaattcaaacacaccctaaga 34228567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 62 - 110
Target Start/End: Complemental strand, 36267597 - 36267549
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaacacaccctaaga 110  Q
    |||||||| ||||||||||||||||| || |||||||||||||||||||    
T  36267597 cctcccctcccttcccctcctaaaccctccatccaaacacaccctaaga 36267549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 62 - 106
Target Start/End: Original strand, 36267753 - 36267797
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaacacaccct 106  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||    
T  36267753 cctcccctcccttcccctcctaaaccctcaatccaaacacaccct 36267797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 62 - 106
Target Start/End: Complemental strand, 37925885 - 37925841
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaacacaccct 106  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||    
T  37925885 cctcccctcccttcccctcctaaaccctcaatccaaacacaccct 37925841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 62 - 106
Target Start/End: Original strand, 39856065 - 39856109
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaacacaccct 106  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||    
T  39856065 cctcccctcccttcccctcctaaaccctcaatccaaacacaccct 39856109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 62 - 109
Target Start/End: Original strand, 33519248 - 33519295
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaacacaccctaag 109  Q
    |||||||| ||||||||||||||||| || ||||||||||||||||||    
T  33519248 cctcccctcccttcccctcctaaaccctccatccaaacacaccctaag 33519295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 108
Target Start/End: Complemental strand, 13770992 - 13770946
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaacacaccctaa 108  Q
    |||||||| ||||||||||||||| | ||||||||||||||||||||    
T  13770992 cctcccctcccttcccctcctaaatcctcaatccaaacacaccctaa 13770946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 108
Target Start/End: Complemental strand, 25887236 - 25887190
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaacacaccctaa 108  Q
    |||||||| |||||||||| |||||| ||||||||||||||||||||    
T  25887236 cctcccctcccttcccctcataaaccctcaatccaaacacaccctaa 25887190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 108
Target Start/End: Complemental strand, 39646513 - 39646467
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaacacaccctaa 108  Q
    |||||||| |||||| |||||||||| ||||||||||||||||||||    
T  39646513 cctcccctcccttcctctcctaaaccgtcaatccaaacacaccctaa 39646467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 62 - 111
Target Start/End: Original strand, 1051698 - 1051747
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaacacaccctaagat 111  Q
    |||| ||| ||||||||||||||||| |||||||||||||||||| ||||    
T  1051698 cctctcctcccttcccctcctaaaccctcaatccaaacacacccttagat 1051747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 64 - 109
Target Start/End: Complemental strand, 41496999 - 41496954
Alignment:
Q  64 tccccttccttcccctcctaaaccttcaatccaaacacaccctaag 109  Q
    |||||| ||||||||||||||||| || ||||||||||||||||||    
T  41496999 tcccctcccttcccctcctaaaccctccatccaaacacaccctaag 41496954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 110
Target Start/End: Complemental strand, 40282241 - 40282193
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaacacaccctaaga 110  Q
    ||||| || ||||||||||||||||| |||||||||||| |||||||||    
T  40282241 cctcctctcccttcccctcctaaaccctcaatccaaacataccctaaga 40282193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 48881600 - 48881556
Alignment:
Q  64 tccccttccttcccctcctaaaccttcaatccaaacacaccctaa 108  Q
    |||||| ||||||||||||||||| || |||||||||||||||||    
T  48881600 tcccctcccttcccctcctaaaccctccatccaaacacaccctaa 48881556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 71 - 106
Target Start/End: Original strand, 48881758 - 48881793
Alignment:
Q  71 ccttcccctcctaaaccttcaatccaaacacaccct 106  Q
    ||||||||||||||||| ||||||||||||||||||    
T  48881758 ccttcccctcctaaaccctcaatccaaacacaccct 48881793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 108
Target Start/End: Complemental strand, 10315655 - 10315621
Alignment:
Q  74 tcccctcctaaaccttcaatccaaacacaccctaa 108  Q
    |||||||||||| ||||||||||||||||||||||    
T  10315655 tcccctcctaaatcttcaatccaaacacaccctaa 10315621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 106
Target Start/End: Complemental strand, 13425158 - 13425120
Alignment:
Q  68 cttccttcccctcctaaaccttcaatccaaacacaccct 106  Q
    |||||||||||||||||||| || |||||||||||||||    
T  13425158 cttccttcccctcctaaaccctctatccaaacacaccct 13425120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 105
Target Start/End: Original strand, 31571671 - 31571713
Alignment:
Q  63 ctccccttccttcccctcctaaaccttcaatccaaacacaccc 105  Q
    |||||||  |||||||||||||||| |||||||||||||||||    
T  31571671 ctcccctcgcttcccctcctaaaccctcaatccaaacacaccc 31571713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 109
Target Start/End: Complemental strand, 37620817 - 37620771
Alignment:
Q  63 ctccccttccttcccctcctaaaccttcaatccaaacacaccctaag 109  Q
    ||||||| ||||||||||| ||||| |||||||||||||||| ||||    
T  37620817 ctcccctcccttcccctcccaaaccctcaatccaaacacaccttaag 37620771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 108
Target Start/End: Complemental strand, 47390899 - 47390853
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaacacaccctaa 108  Q
    ||||| || |||||||||||||| || ||||||||||||||||||||    
T  47390899 cctccactcccttcccctcctaacccctcaatccaaacacaccctaa 47390853  T

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Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 38
Target Start/End: Original strand, 45940798 - 45940831
Alignment:
Q  5 ttaatttattttagaaaaatgtgttatatagtct 38  Q
    |||||||||||||||||||| |||||||||||||    
T  45940798 ttaatttattttagaaaaatatgttatatagtct 45940831  T

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Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 106
Target Start/End: Complemental strand, 4833575 - 4833531
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaacacaccct 106  Q
    |||||||| ||||||||||||||||| || ||||||||| |||||    
T  4833575 cctcccctcccttcccctcctaaaccctccatccaaacataccct 4833531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 106
Target Start/End: Original strand, 18231786 - 18231830
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaacacaccct 106  Q
    |||||||| ||||||||||||||||  || |||||||||||||||    
T  18231786 cctcccctcccttcccctcctaaacgctccatccaaacacaccct 18231830  T

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Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 103
Target Start/End: Original strand, 31364253 - 31364285
Alignment:
Q  71 ccttcccctcctaaaccttcaatccaaacacac 103  Q
    ||||||||||||||||| |||||||||||||||    
T  31364253 ccttcccctcctaaaccctcaatccaaacacac 31364285  T

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Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 108
Target Start/End: Original strand, 33655318 - 33655354
Alignment:
Q  72 cttcccctcctaaaccttcaatccaaacacaccctaa 108  Q
    |||||||||||||||| ||||||||||||||| ||||    
T  33655318 cttcccctcctaaaccctcaatccaaacacactctaa 33655354  T

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Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 106
Target Start/End: Original strand, 37417835 - 37417867
Alignment:
Q  74 tcccctcctaaaccttcaatccaaacacaccct 106  Q
    |||||||||||||| ||||||||||||||||||    
T  37417835 tcccctcctaaaccctcaatccaaacacaccct 37417867  T

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Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 108
Target Start/End: Original strand, 41008384 - 41008424
Alignment:
Q  68 cttccttcccctcctaaaccttcaatccaaacacaccctaa 108  Q
    |||||||||||||||||||| |  |||||||||||||||||    
T  41008384 cttccttcccctcctaaaccctgcatccaaacacaccctaa 41008424  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 71 - 106
Target Start/End: Original strand, 4247729 - 4247764
Alignment:
Q  71 ccttcccctcctaaaccttcaatccaaacacaccct 106  Q
    ||||||||||||||||||||||||||||||||||||    
T  4247729 ccttcccctcctaaaccttcaatccaaacacaccct 4247764  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 108
Target Start/End: Original strand, 31543272 - 31543318
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaacacaccctaa 108  Q
    |||||||| ||||||||||||||||| |||||| |||||||||||||    
T  31543272 cctcccctcccttcccctcctaaaccctcaatcgaaacacaccctaa 31543318  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 108
Target Start/End: Original strand, 31738623 - 31738669
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaacacaccctaa 108  Q
    ||||||||| |||||||||||||||| || |||||||||||||||||    
T  31738623 cctcccctttcttcccctcctaaaccctccatccaaacacaccctaa 31738669  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 108
Target Start/End: Original strand, 43732887 - 43732933
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaacacaccctaa 108  Q
    |||||||| ||||||||||||||||| || |||||||||||||||||    
T  43732887 cctcccctcccttcccctcctaaaccctccatccaaacacaccctaa 43732933  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 63 - 108
Target Start/End: Complemental strand, 2248495 - 2248450
Alignment:
Q  63 ctccccttccttcccctcctaaaccttcaatccaaacacaccctaa 108  Q
    ||||||| ||||||||||||||||  ||||||||||||||||||||    
T  2248495 ctcccctcccttcccctcctaaactctcaatccaaacacaccctaa 2248450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 106
Target Start/End: Original strand, 8815341 - 8815385
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaacacaccct 106  Q
    |||||||| ||| ||||||||||||| ||||||||||||||||||    
T  8815341 cctcccctccctccccctcctaaaccctcaatccaaacacaccct 8815385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 106
Target Start/End: Original strand, 12022343 - 12022387
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaacacaccct 106  Q
    |||||||| | ||||||||||||||| ||||||||||||||||||    
T  12022343 cctcccctcctttcccctcctaaaccctcaatccaaacacaccct 12022387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 106
Target Start/End: Complemental strand, 43732723 - 43732679
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaacacaccct 106  Q
    ||||| || ||||||||||||||||| ||||||||||||||||||    
T  43732723 cctcctctcccttcccctcctaaaccctcaatccaaacacaccct 43732679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 102
Target Start/End: Original strand, 7394663 - 7394701
Alignment:
Q  64 tccccttccttcccctcctaaaccttcaatccaaacaca 102  Q
    |||||| ||||||||||||||||| ||||||||||||||    
T  7394663 tcccctcccttcccctcctaaaccctcaatccaaacaca 7394701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 110
Target Start/End: Complemental strand, 8815175 - 8815137
Alignment:
Q  72 cttcccctcctaaaccttcaatccaaacacaccctaaga 110  Q
    |||||||||||||||| || |||||||||||||||||||    
T  8815175 cttcccctcctaaaccctccatccaaacacaccctaaga 8815137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 106
Target Start/End: Original strand, 9718681 - 9718723
Alignment:
Q  64 tccccttccttcccctcctaaaccttcaatccaaacacaccct 106  Q
    |||||| ||||| ||||||||||| ||||||||||||||||||    
T  9718681 tcccctcccttctcctcctaaaccctcaatccaaacacaccct 9718723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 109
Target Start/End: Complemental strand, 16024196 - 16024150
Alignment:
Q  63 ctccccttccttcccctcctaaaccttcaatccaaacacaccctaag 109  Q
    ||||||| ||||||| ||||||||| |||||||||||||||| ||||    
T  16024196 ctcccctcccttcccttcctaaaccctcaatccaaacacaccataag 16024150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 106
Target Start/End: Original strand, 40633186 - 40633232
Alignment:
Q  60 aacctccccttccttcccctcctaaaccttcaatccaaacacaccct 106  Q
    ||||||| |||||||||| ||| ||||| ||||||||||||||||||    
T  40633186 aacctccgcttccttcccttccgaaaccctcaatccaaacacaccct 40633232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 108
Target Start/End: Complemental strand, 3726898 - 3726861
Alignment:
Q  71 ccttcccctcctaaaccttcaatccaaacacaccctaa 108  Q
    ||||||||||||||||| || |||||||||||||||||    
T  3726898 ccttcccctcctaaaccctccatccaaacacaccctaa 3726861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 106
Target Start/End: Complemental strand, 9933269 - 9933240
Alignment:
Q  77 cctcctaaaccttcaatccaaacacaccct 106  Q
    ||||||||||||||||||||||||||||||    
T  9933269 cctcctaaaccttcaatccaaacacaccct 9933240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 108
Target Start/End: Complemental strand, 30365173 - 30365128
Alignment:
Q  63 ctccccttccttcccctcctaaaccttcaatccaaacacaccctaa 108  Q
    ||||||| | ||| ||||||||||| ||||||||||||||||||||    
T  30365173 ctcccctcctttctcctcctaaaccctcaatccaaacacaccctaa 30365128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 45
Target Start/End: Original strand, 37923219 - 37923260
Alignment:
Q  4 cttaatttattttagaaaaatgtgttatatagtctttaattt 45  Q
    ||||||||||||||||||||  ||||||||||||| ||||||    
T  37923219 cttaatttattttagaaaaacatgttatatagtctgtaattt 37923260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 110
Target Start/End: Original strand, 2481977 - 2482021
Alignment:
Q  66 cccttccttcccctcctaaaccttcaatccaaacacaccctaaga 110  Q
    |||| ||||||||||||||||| || ||||||||| |||||||||    
T  2481977 ccctcccttcccctcctaaaccctccatccaaacataccctaaga 2482021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 3726995 - 3727035
Alignment:
Q  3 gcttaatttattttagaaaaatgtgttatatagtctttaat 43  Q
    |||||||||||||||||||||  ||||||||||||| ||||    
T  3726995 gcttaatttattttagaaaaacatgttatatagtctgtaat 3727035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 106
Target Start/End: Complemental strand, 6315102 - 6315066
Alignment:
Q  70 tccttcccctcctaaaccttcaatccaaacacaccct 106  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  6315102 tccttcgcctcctaaaccctcaatccaaacacaccct 6315066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 64 - 108
Target Start/End: Original strand, 8671996 - 8672040
Alignment:
Q  64 tccccttccttcccctcctaaaccttcaatccaaacacaccctaa 108  Q
    |||||| ||||||||| ||||| | ||||||||||||||||||||    
T  8671996 tcccctaccttccccttctaaatcctcaatccaaacacaccctaa 8672040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 106
Target Start/End: Complemental strand, 41103548 - 41103504
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaacacaccct 106  Q
    ||||||||  |||||||||||||||| || |||||||||||||||    
T  41103548 cctcccctctcttcccctcctaaaccctccatccaaacacaccct 41103504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 108
Target Start/End: Complemental strand, 6628 - 6582
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaacacaccctaa 108  Q
    |||||||| ||||| ||||||||| ||||||||||||||||||||||    
T  6628 cctcccctcccttctcctcctaaaacttcaatccaaacacaccctaa 6582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 74 - 109
Target Start/End: Complemental strand, 184643 - 184608
Alignment:
Q  74 tcccctcctaaaccttcaatccaaacacaccctaag 109  Q
    |||||||||||||| |||||||||||||||||||||    
T  184643 tcccctcctaaaccctcaatccaaacacaccctaag 184608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0198 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0198
Description:

Target: scaffold0198; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 103
Target Start/End: Complemental strand, 3190 - 3150
Alignment:
Q  63 ctccccttccttcccctcctaaaccttcaatccaaacacac 103  Q
    ||||||| ||||||||||||||||  |||||||||||||||    
T  3190 ctcccctcccttcccctcctaaactctcaatccaaacacac 3150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 108
Target Start/End: Complemental strand, 52930 - 52894
Alignment:
Q  72 cttcccctcctaaaccttcaatccaaacacaccctaa 108  Q
    |||||| ||||||||| ||||||||||||||||||||    
T  52930 cttcccatcctaaaccctcaatccaaacacaccctaa 52894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 106
Target Start/End: Original strand, 39390 - 39434
Alignment:
Q  62 cctccccttccttcccctcctaaaccttcaatccaaacacaccct 106  Q
    |||||||| |||| |||| ||||||| ||||||||||||||||||    
T  39390 cctcccctccctttcccttctaaaccctcaatccaaacacaccct 39434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 103
Target Start/End: Complemental strand, 1215 - 1175
Alignment:
Q  63 ctccccttccttcccctcctaaaccttcaatccaaacacac 103  Q
    |||||||  |||||||||||||||| |||||||||||||||    
T  1215 ctcccctctcttcccctcctaaaccctcaatccaaacacac 1175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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