View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13037_low_3 (Length: 645)
Name: NF13037_low_3
Description: NF13037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13037_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 581; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 581; E-Value: 0
Query Start/End: Original strand, 1 - 627
Target Start/End: Complemental strand, 29839227 - 29838605
Alignment:
| Q |
1 |
attttaggatggacgaaacagttgttacctccatggaaaacatgagcataatattttgatggatgcattattccctagcgatgctaaatcaacggtttgc |
100 |
Q |
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| T |
29839227 |
attttaggatggacgaaacagttgttacctccatggaaaacatgagcataatattatgatggatgcattattccctagcgatgctaaatcaacggtttgc |
29839128 |
T |
|
| Q |
101 |
ataatcgacataactttgcgataagataactaaataaatttccatgttagggaagcagattagtttttagccactgaggaacaatgatacaaatgacact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29839127 |
ataatcgacataactttgcgataagataactaaataaatttccatgttagggaagcagattagtttttagccactgaggaacaatgatacaaatgacact |
29839028 |
T |
|
| Q |
201 |
tgacgagtctatgcaaaagaaacatcaatacctgtcctaaagcttgtagagagagtgctcggagaactccttccgctaggtcaactggtaagtttctcct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29839027 |
tgacgagtctatgcaaaagaaacatcaatacctgtcctaaagcttgtagagagagtgctcggagaactccttccgctaggtcaactggtaagtttctcct |
29838928 |
T |
|
| Q |
301 |
aaaatcaaagccagagtaataaacatcaaaggaatgaagaaggttatttagattaaacaatacaaaaatgggacaatccagatatgtacaaacctgagtt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29838927 |
aaaatcaaagccagagtaataaacatcaaaggaatgaagaaggttatttagattaaacaatacaaaaatgggacaatccagatatgtacaaacctgagtt |
29838828 |
T |
|
| Q |
401 |
ctgcaggtagctgtggaagaacatgtttgactgcgcaatccagatatccagaagcctttaagaagatatcaatagaagttcgtctgctttctatcagtcg |
500 |
Q |
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| T |
29838827 |
ctgcaggtagctgtggaagaacatgtttgactgcgcaatccagatatccagaagcctttaagaagatatcaatagaagttcgtctgctttctattagtcg |
29838728 |
T |
|
| Q |
501 |
ataccaaaagattaaatttcacattatcggattgtggcaaaatggaacnnnnnnnnnngaaagaatatattaactacttttcagtttaatttgcctattg |
600 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
29838727 |
ataccaaaagattaaatttcacattatcggattgtggcaaaatggaacaaaaaaa----aaagaatatattaactacttttcagtttaatttgcctattg |
29838632 |
T |
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| Q |
601 |
cgacaaattagcaattactagtcatta |
627 |
Q |
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| T |
29838631 |
cgacaaattagcaattactagtcatta |
29838605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 226 - 307
Target Start/End: Original strand, 34627277 - 34627358
Alignment:
| Q |
226 |
caatacctgtcctaaagcttgtagagagagtgctcggagaactccttccgctaggtcaactggtaagtttctcctaaaatca |
307 |
Q |
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|||||||||||| || ||||||||| |||| || || ||||||||||| || ||||| |||||||| ||||||||||||||| |
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| T |
34627277 |
caatacctgtcccaatgcttgtagacagagcgcacgaagaactccttctgcaaggtctactggtaaatttctcctaaaatca |
34627358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 472
Target Start/End: Original strand, 34627445 - 34627526
Alignment:
| Q |
391 |
aacctgagttctgcaggtagctgtggaagaacatgtttgactgcgcaatccagatatccagaagcctttaagaagatatcaa |
472 |
Q |
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|||||||| || ||||| | ||||||||||||||| |||| || || || ||||| ||| |||||||||||||||||||| |
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| T |
34627445 |
aacctgagctcagcaggcaactgtggaagaacatgcctgacagcacagtcaagatacccaccagcctttaagaagatatcaa |
34627526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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