View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13037_low_32 (Length: 311)
Name: NF13037_low_32
Description: NF13037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13037_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 12 - 310
Target Start/End: Complemental strand, 12521880 - 12521582
Alignment:
| Q |
12 |
atgaatgtttggaaggaccgacgagctggtcagcatatagatcaagaatcttttcttcagaacaaaatgcagcaacagtgcgtatgttgctcacagcctc |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12521880 |
atgaatgtttggaaggaccgacgagctggtcagcatatagatcaagaatcttttcttcagaacaaaatgcagcaacagtgcgtatgttgctcacagcctc |
12521781 |
T |
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| Q |
112 |
gccagcaagcatgttggcttttagatatgctttgctcaagttgccaccatagcctttcatgaaaagtttctgaaatgacagaaggaatgtatttaaagac |
211 |
Q |
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| T |
12521780 |
gccagcaagcatgttggcttttagatatgctttgctcaagttgccaccatagcctttcatgaaaagtttctgaaatgacagaaggaatgtatttaaagac |
12521681 |
T |
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| Q |
212 |
ctgtttgaattggcttacttcagcttatctatcgacataatcaattttgagactgtttggaagagcttgtagaagctgcttatgatatgttcataagct |
310 |
Q |
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| T |
12521680 |
ctgtttgaattggcttacttcagcttatctatcgacataatcaattttgagactgtttggaagagcttgtagaagctgcttatgatatgttcataagct |
12521582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 12 - 187
Target Start/End: Complemental strand, 27730009 - 27729834
Alignment:
| Q |
12 |
atgaatgtttggaaggaccgacgagctggtcagcatatagatcaagaatcttttcttcagaacaaaatgcagcaacagtgcgtatgttgctcacagcctc |
111 |
Q |
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||||| |||||||||| | || |||| |||||||| ||||||| || ||||||||||| ||| |||||||| ||||| | ||| || || |||||||| |
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| T |
27730009 |
atgaacgtttggaaggctcaacaagctcatcagcataaagatcaataaccttttcttcagcacagaatgcagccacagtccttatattactaacagcctc |
27729910 |
T |
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| Q |
112 |
gccagcaagcatgttggcttttagatatgctttgctcaagttgccaccatagcctttcatgaaaagtttctgaaat |
187 |
Q |
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| T |
27729909 |
cccagctaacatatttgcttttagatatgctttgcttagattaccaccaaatccttgcatgaaaagtttctgaaat |
27729834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 310
Target Start/End: Complemental strand, 33553391 - 33553294
Alignment:
| Q |
213 |
tgtttgaattggcttacttcagcttatctatcgacataatcaattttgagactgtttggaagagcttgtagaagctgcttatgatatgttcataagct |
310 |
Q |
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|||||| ||| ||||| || |||||||||||| |||||| || || ||| |||||||||||||||| | ||||| ||||||| |||| | |||||| |
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| T |
33553391 |
tgtttggattagcttatttgagcttatctatcaacataagcacttgtgatgctgtttggaagagcttattgaagcaacttatgacatgtccctaagct |
33553294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 310
Target Start/End: Complemental strand, 2457094 - 2456996
Alignment:
| Q |
211 |
cctgtttgaattggcttacttcagcttatctatcgacataatcaattttgagactgtttggaagagcttgtagaagctgcttatgatatgttcataagct |
310 |
Q |
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|||||||| ||||||||| || || ||||||| |||||||| || || | ||||||||||| || ||||| ||||| |||||| |||||| |||||||| |
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| T |
2457094 |
cctgtttggattggcttatttgagattatctaccgacataagcacttgtaagactgtttgg-agcacttgtggaagcagcttataatatgtccataagct |
2456996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 276
Target Start/End: Original strand, 25103216 - 25103280
Alignment:
| Q |
212 |
ctgtttgaattggcttacttcagcttatctatcgacataatcaattttgagactgtttggaagag |
276 |
Q |
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||||||||||||||| | || ||||||||||| | ||||| || | |||||||||||||||||| |
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| T |
25103216 |
ctgtttgaattggctaatttgagcttatctattggcataagcagtgctgagactgtttggaagag |
25103280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 215 - 310
Target Start/End: Complemental strand, 27294495 - 27294400
Alignment:
| Q |
215 |
tttgaattggcttacttcagcttatctatcgacataatcaattttgagactgtttggaagagcttgtagaagctgcttatgatatgttcataagct |
310 |
Q |
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||||||||||||||||| || |||||||| | ||||| || || |||||||||||| |||||| ||||| | || |||||||| ||||||||| |
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| T |
27294495 |
tttgaattggcttacttgagtttatctattgtcataagcacttgtgagactgtttgagagagctcatagaaacaactcatgatatgctcataagct |
27294400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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