View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13037_low_36 (Length: 302)
Name: NF13037_low_36
Description: NF13037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13037_low_36 |
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Alignment Details
Target: chr8 (Bit Score: 79; Significance: 6e-37; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 43147022 - 43147104
Alignment:
| Q |
1 |
attataaaacaaatatagaaaagacgtataaaattacatagaagtcaactttactctgaactgtgttaccaaatttttgtgtt |
83 |
Q |
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| T |
43147022 |
attataaaacaaatatagaaaagacgtataaaattatatagaagtcaactttactctgaactgtgttaccaaatttttgtgtt |
43147104 |
T |
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Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 224 - 283
Target Start/End: Original strand, 43147245 - 43147304
Alignment:
| Q |
224 |
agttgagtgcattatgggagtgtttggcccagcttattgccgacattttctactccttaa |
283 |
Q |
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| T |
43147245 |
agttgagtgcattatgggagtgtttggcccagcttattgccgacattttctactccttaa |
43147304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 224 - 283
Target Start/End: Original strand, 39362723 - 39362781
Alignment:
| Q |
224 |
agttgagtgcattatgggagtgtttggcccagcttattgccgacattttctactccttaa |
283 |
Q |
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| T |
39362723 |
agttgagtgcattatgggagtgtttggcccagcttattgctgac-ttttctagtccttaa |
39362781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 39362589 - 39362631
Alignment:
| Q |
7 |
aaacaaatatagaaaagacgtataaaattacatagaagtcaac |
49 |
Q |
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| T |
39362589 |
aaacaaatatagaaaagacgtgtaaaactaaatagaagtcaac |
39362631 |
T |
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