View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13037_low_38 (Length: 291)

Name: NF13037_low_38
Description: NF13037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13037_low_38
NF13037_low_38
[»] chr8 (9 HSPs)
chr8 (83-273)||(37586350-37586541)
chr8 (76-134)||(18764612-18764670)
chr8 (76-134)||(31186372-31186430)
chr8 (80-136)||(31685973-31686029)
chr8 (76-135)||(3272746-3272805)
chr8 (76-135)||(9180042-9180101)
chr8 (13-56)||(37586281-37586324)
chr8 (76-134)||(26479621-26479679)
chr8 (80-137)||(13154234-13154291)
[»] chr4 (10 HSPs)
chr4 (76-134)||(11021671-11021729)
chr4 (79-135)||(46480943-46480999)
chr4 (76-137)||(17864942-17865003)
chr4 (76-136)||(5720949-5721009)
chr4 (76-136)||(4712175-4712235)
chr4 (76-135)||(989402-989461)
chr4 (76-135)||(4712504-4712563)
chr4 (76-134)||(39385489-39385547)
chr4 (76-137)||(16960091-16960152)
chr4 (76-109)||(26314802-26314835)
[»] chr5 (9 HSPs)
chr5 (76-137)||(15969425-15969486)
chr5 (80-134)||(43196899-43196953)
chr5 (80-136)||(6497523-6497579)
chr5 (76-135)||(10461672-10461731)
chr5 (80-135)||(22394121-22394176)
chr5 (76-134)||(14868675-14868733)
chr5 (76-134)||(40589579-40589637)
chr5 (80-137)||(5933120-5933177)
chr5 (80-137)||(18786311-18786368)
[»] chr2 (11 HSPs)
chr2 (76-137)||(29683171-29683232)
chr2 (80-135)||(37609286-37609341)
chr2 (80-134)||(6880000-6880054)
chr2 (80-134)||(25318625-25318679)
chr2 (76-137)||(7877652-7877713)
chr2 (76-136)||(2395153-2395213)
chr2 (76-135)||(13572469-13572528)
chr2 (76-133)||(14379440-14379497)
chr2 (76-109)||(18369339-18369372)
chr2 (86-135)||(42704986-42705035)
chr2 (76-136)||(12806544-12806604)
[»] chr6 (8 HSPs)
chr6 (76-135)||(19661676-19661735)
chr6 (76-137)||(3345346-3345407)
chr6 (76-134)||(30609193-30609251)
chr6 (76-136)||(28853812-28853872)
chr6 (80-136)||(29819411-29819467)
chr6 (80-134)||(28853482-28853536)
chr6 (76-133)||(5923825-5923882)
chr6 (80-136)||(9571727-9571783)
[»] chr3 (9 HSPs)
chr3 (76-137)||(49499838-49499899)
chr3 (76-135)||(27934448-27934507)
chr3 (76-136)||(46962909-46962969)
chr3 (76-134)||(52835543-52835601)
chr3 (76-109)||(16056372-16056405)
chr3 (76-136)||(29838621-29838681)
chr3 (13-53)||(33162584-33162624)
chr3 (76-132)||(42093721-42093777)
chr3 (83-135)||(55092541-55092593)
[»] scaffold0817 (1 HSPs)
scaffold0817 (76-135)||(3980-4039)
[»] chr7 (5 HSPs)
chr7 (80-135)||(40729394-40729449)
chr7 (76-135)||(44219621-44219680)
chr7 (76-134)||(34595646-34595704)
chr7 (76-136)||(19476389-19476449)
chr7 (76-136)||(44483225-44483285)
[»] chr1 (11 HSPs)
chr1 (76-135)||(12322089-12322148)
chr1 (76-135)||(20062125-20062184)
chr1 (76-136)||(14602335-14602395)
chr1 (80-135)||(37172245-37172300)
chr1 (76-137)||(33552-33613)
chr1 (80-137)||(33888-33945)
chr1 (76-137)||(33619223-33619284)
chr1 (76-136)||(28031643-28031703)
chr1 (77-137)||(50616934-50616994)
chr1 (77-137)||(50624761-50624821)
chr1 (80-136)||(50625095-50625151)
[»] scaffold0028 (1 HSPs)
scaffold0028 (76-134)||(73931-73989)
[»] scaffold0137 (2 HSPs)
scaffold0137 (76-135)||(37062-37121)
scaffold0137 (80-137)||(36762-36819)
[»] scaffold0103 (1 HSPs)
scaffold0103 (76-134)||(43605-43663)


Alignment Details
Target: chr8 (Bit Score: 156; Significance: 6e-83; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 83 - 273
Target Start/End: Original strand, 37586350 - 37586541
Alignment:
Q  83 gaataaaaccaaaacgccagatatttgtaaagacaattttcatatttaagcctaaggatatttatatagaggtaattatatcacgatttgtttttta-aa 181  Q
    |||||||||||||||||||||||||||||| ||| |||| |||||||||  |||||||||||||||||||||||||||||||||||||||||||||  ||    
T  37586350 gaataaaaccaaaacgccagatatttgtaaggaccatttccatatttaaatctaaggatatttatatagaggtaattatatcacgatttgtttttttgaa 37586449  T
Q  182 taatgtacactatattaatattgcggataagtaatctataacggaacaacaaagttttaataggaatgggatataagaattaagaacagtcc 273  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  37586450 taatgtacactatattaatattgcggataagtaatctataacggaacaacaaagttttaaaaggaatgggatataagaattaagaacagtcc 37586541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 134
Target Start/End: Original strand, 18764612 - 18764670
Alignment:
Q  76 ttatagggaataaaaccaaaacgccagatatttgtaaagacaattttcatatttaagcc 134  Q
    ||||||||| || ||||||||||||||||||||| |  ||| |||||||||||||||||    
T  18764612 ttatagggactataaccaaaacgccagatatttgcagggaccattttcatatttaagcc 18764670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 134
Target Start/End: Complemental strand, 31186430 - 31186372
Alignment:
Q  76 ttatagggaataaaaccaaaacgccagatatttgtaaagacaattttcatatttaagcc 134  Q
    ||||||||| |||||||||||||||||||||||| |  ||| |||| ||||||||||||    
T  31186430 ttatagggactaaaaccaaaacgccagatatttgcagggaccatttccatatttaagcc 31186372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 136
Target Start/End: Original strand, 31685973 - 31686029
Alignment:
Q  80 agggaataaaaccaaaacgccagatatttgtaaagacaattttcatatttaagccta 136  Q
    ||||| ||||||||||| | ||||||||||||| ||| || ||||||||||||||||    
T  31685973 agggactaaaaccaaaatgtcagatatttgtaaggactatattcatatttaagccta 31686029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 135
Target Start/End: Complemental strand, 3272805 - 3272746
Alignment:
Q  76 ttatagggaataaaaccaaaacgccagatatttgtaaagacaattttcatatttaagcct 135  Q
    ||||||||| |||||||||||||||||||||||| |  ||  |||| |||||||||||||    
T  3272805 ttatagggactaaaaccaaaacgccagatatttgcagggatcatttacatatttaagcct 3272746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 135
Target Start/End: Complemental strand, 9180101 - 9180042
Alignment:
Q  76 ttatagggaataaaaccaaaacgccagatatttgtaaagacaattttcatatttaagcct 135  Q
    ||||||| | ||||| |||||||||||||||||| |  ||| ||||||||||||||||||    
T  9180101 ttataggaattaaaatcaaaacgccagatatttgcagggaccattttcatatttaagcct 9180042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 56
Target Start/End: Original strand, 37586281 - 37586324
Alignment:
Q  13 aaaatatcaaagaccaaaaccaaatatccaatatttgcaagact 56  Q
    |||||| ||| ||||||||||||||||||||||||| |||||||    
T  37586281 aaaataccaaggaccaaaaccaaatatccaatatttacaagact 37586324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 134
Target Start/End: Original strand, 26479621 - 26479679
Alignment:
Q  76 ttatagggaataaaaccaaaacgccagatatttgtaaagacaattttcatatttaagcc 134  Q
    ||||||||| |||||||||||||||||||||||| |  ||| |||| |||||| |||||    
T  26479621 ttatagggactaaaaccaaaacgccagatatttgcagggaccatttccatattaaagcc 26479679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 13154291 - 13154234
Alignment:
Q  80 agggaataaaaccaaaacgccagatatttgtaaagacaattttcatatttaagcctaa 137  Q
    ||||| |||||||||||| ||||||||||| |  ||| |||| |||||||||||||||    
T  13154291 agggactaaaaccaaaacaccagatatttgcagggaccatttccatatttaagcctaa 13154234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 76 - 134
Target Start/End: Complemental strand, 11021729 - 11021671
Alignment:
Q  76 ttatagggaataaaaccaaaacgccagatatttgtaaagacaattttcatatttaagcc 134  Q
    ||||||||| ||||||||||||||||||||||||||  ||| |||||||||||||||||    
T  11021729 ttatagggactaaaaccaaaacgccagatatttgtagggaccattttcatatttaagcc 11021671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 79 - 135
Target Start/End: Complemental strand, 46480999 - 46480943
Alignment:
Q  79 tagggaataaaaccaaaacgccagatatttgtaaagacaattttcatatttaagcct 135  Q
    |||||| |||||||||||||||||||||||| || ||| ||||||||||||||||||    
T  46480999 tagggactaaaaccaaaacgccagatatttgcaaggaccattttcatatttaagcct 46480943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 137
Target Start/End: Complemental strand, 17865003 - 17864942
Alignment:
Q  76 ttatagggaataaaaccaaaacgccagatatttgtaaagacaattttcatatttaagcctaa 137  Q
    ||||| ||| |||||||||||||||||||||||| || ||| |||| |||||||||||||||    
T  17865003 ttatatggactaaaaccaaaacgccagatatttgcaaggaccatttccatatttaagcctaa 17864942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 5721009 - 5720949
Alignment:
Q  76 ttatagggaataaaaccaaaacgccagatatttgtaaagacaattttcatatttaagccta 136  Q
    ||||||||| |||||||||||||||||||||||| |  ||| |||| ||||||||||||||    
T  5721009 ttatagggactaaaaccaaaacgccagatatttgcagggaccatttccatatttaagccta 5720949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 4712235 - 4712175
Alignment:
Q  76 ttatagggaataaaaccaaaacgccagatatttgtaaagacaattttcatatttaagccta 136  Q
    ||||||| | |||||||||||||||| ||||||| |  ||| |||||||||||||||||||    
T  4712235 ttataggaactaaaaccaaaacgccaaatatttgcagggaccattttcatatttaagccta 4712175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 135
Target Start/End: Original strand, 989402 - 989461
Alignment:
Q  76 ttatagggaataaaaccaaaacgccagatatttgtaaagacaattttcatatttaagcct 135  Q
    ||||||||| ||||||||||||| |||||||||| |  ||| |||| |||||||||||||    
T  989402 ttatagggactaaaaccaaaacgtcagatatttgcagggaccatttccatatttaagcct 989461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 135
Target Start/End: Original strand, 4712504 - 4712563
Alignment:
Q  76 ttatagggaataaaaccaaaacgccagatatttgtaaagacaattttcatatttaagcct 135  Q
    ||||||||| ||||||||||| | |||||||||| |  ||| ||||||||||||||||||    
T  4712504 ttatagggactaaaaccaaaatgtcagatatttgcagggactattttcatatttaagcct 4712563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 134
Target Start/End: Original strand, 39385489 - 39385547
Alignment:
Q  76 ttatagggaataaaaccaaaacgccagatatttgtaaagacaattttcatatttaagcc 134  Q
    ||||||||| ||||| ||||||| ||||||||||||  ||| |||| ||||||||||||    
T  39385489 ttatagggattaaaagcaaaacgtcagatatttgtagggaccatttccatatttaagcc 39385547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 137
Target Start/End: Original strand, 16960091 - 16960152
Alignment:
Q  76 ttatagggaataaaaccaaaacgccagatatttgtaaagacaattttcatatttaagcctaa 137  Q
    ||||||||| ||||||||||| || ||||||||| |  ||| |||| |||||||||||||||    
T  16960091 ttatagggactaaaaccaaaatgcaagatatttgcagggaccatttccatatttaagcctaa 16960152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 109
Target Start/End: Original strand, 26314802 - 26314835
Alignment:
Q  76 ttatagggaataaaaccaaaacgccagatatttg 109  Q
    ||||||||| ||||||||||||||||||||||||    
T  26314802 ttatagggattaaaaccaaaacgccagatatttg 26314835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 76 - 137
Target Start/End: Complemental strand, 15969486 - 15969425
Alignment:
Q  76 ttatagggaataaaaccaaaacgccagatatttgtaaagacaattttcatatttaagcctaa 137  Q
    ||||||||| |||||||||||||||| |||||||||| ||| |||| |||||||||||||||    
T  15969486 ttatagggactaaaaccaaaacgccaaatatttgtaaggaccatttccatatttaagcctaa 15969425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 80 - 134
Target Start/End: Complemental strand, 43196953 - 43196899
Alignment:
Q  80 agggaataaaaccaaaacgccagatatttgtaaagacaattttcatatttaagcc 134  Q
    ||||| ||||||||||| | ||||||||||||| ||| |||||||||||||||||    
T  43196953 agggactaaaaccaaaatgtcagatatttgtaaggactattttcatatttaagcc 43196899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 136
Target Start/End: Original strand, 6497523 - 6497579
Alignment:
Q  80 agggaataaaaccaaaacgccagatatttgtaaagacaattttcatatttaagccta 136  Q
    ||||| ||||||||||| | |||||||||| |  |||||||||||||||||||||||    
T  6497523 agggactaaaaccaaaatgtcagatatttgcagggacaattttcatatttaagccta 6497579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 135
Target Start/End: Original strand, 10461672 - 10461731
Alignment:
Q  76 ttatagggaataaaaccaaaacgccagatatttgtaaagacaattttcatatttaagcct 135  Q
    ||||||||| ||||| |||||||||||||||||| |  ||| |||| |||||||||||||    
T  10461672 ttatagggactaaaatcaaaacgccagatatttgcagggaccatttccatatttaagcct 10461731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 80 - 135
Target Start/End: Complemental strand, 22394176 - 22394121
Alignment:
Q  80 agggaataaaaccaaaacgccagatatttgtaaagacaattttcatatttaagcct 135  Q
    ||||| ||||||||||| | |||||||||| |  ||||||||||||||||||||||    
T  22394176 agggactaaaaccaaaatgtcagatatttgcagggacaattttcatatttaagcct 22394121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 134
Target Start/End: Complemental strand, 14868733 - 14868675
Alignment:
Q  76 ttatagggaataaaaccaaaacgccagatatttgtaaagacaattttcatatttaagcc 134  Q
    ||||||||| |||||||||||||||||||||||| |  |||  ||| ||||||||||||    
T  14868733 ttatagggactaaaaccaaaacgccagatatttggagggaccgtttccatatttaagcc 14868675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 134
Target Start/End: Original strand, 40589579 - 40589637
Alignment:
Q  76 ttatagggaataaaaccaaaacgccagatatttgtaaagacaattttcatatttaagcc 134  Q
    ||||||||| ||||| |||||||||||||||||| |  ||| |||| ||||||||||||    
T  40589579 ttatagggattaaaagcaaaacgccagatatttgcagggaccatttccatatttaagcc 40589637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 5933177 - 5933120
Alignment:
Q  80 agggaataaaaccaaaacgccagatatttgtaaagacaattttcatatttaagcctaa 137  Q
    ||||| ||||||||||| | || ||||||| |  ||||||||||||||||||||||||    
T  5933177 agggactaaaaccaaaatgtcacatatttgcagggacaattttcatatttaagcctaa 5933120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 137
Target Start/End: Original strand, 18786311 - 18786368
Alignment:
Q  80 agggaataaaaccaaaacgccagatatttgtaaagacaattttcatatttaagcctaa 137  Q
    ||||| |||||||||||||||||||||||| |  ||| |||| ||||||||| |||||    
T  18786311 agggactaaaaccaaaacgccagatatttgcagggaccatttccatatttaaacctaa 18786368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 76 - 137
Target Start/End: Complemental strand, 29683232 - 29683171
Alignment:
Q  76 ttatagggaataaaaccaaaacgccagatatttgtaaagacaattttcatatttaagcctaa 137  Q
    ||||||||| |||||||||||||||||||||||| |  ||| ||||||||||||||||||||    
T  29683232 ttatagggactaaaaccaaaacgccagatatttgcagggaccattttcatatttaagcctaa 29683171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 80 - 135
Target Start/End: Original strand, 37609286 - 37609341
Alignment:
Q  80 agggaataaaaccaaaacgccagatatttgtaaagacaattttcatatttaagcct 135  Q
    ||||| |||||||||||||||||||||||| || ||| |||| |||||||||||||    
T  37609286 agggactaaaaccaaaacgccagatatttgcaaggaccatttccatatttaagcct 37609341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 80 - 134
Target Start/End: Complemental strand, 6880054 - 6880000
Alignment:
Q  80 agggaataaaaccaaaacgccagatatttgtaaagacaattttcatatttaagcc 134  Q
    ||||| ||||||||||| | ||||||||||||  |||||||||||||||||||||    
T  6880054 agggactaaaaccaaaatgtcagatatttgtagggacaattttcatatttaagcc 6880000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 80 - 134
Target Start/End: Original strand, 25318625 - 25318679
Alignment:
Q  80 agggaataaaaccaaaacgccagatatttgtaaagacaattttcatatttaagcc 134  Q
    ||||| |||||||||||||||||||||||| || ||| |||| ||||||||||||    
T  25318625 agggactaaaaccaaaacgccagatatttgcaaggaccatttccatatttaagcc 25318679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 76 - 137
Target Start/End: Original strand, 7877652 - 7877713
Alignment:
Q  76 ttatagggaataaaaccaaaacgccagatatttgtaaagacaattttcatatttaagcctaa 137  Q
    ||||||||| || ||||||||||||||||||||| |  ||| |||||||||||||| |||||    
T  7877652 ttatagggactagaaccaaaacgccagatatttgcagggaccattttcatatttaaacctaa 7877713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 2395213 - 2395153
Alignment:
Q  76 ttatagggaataaaaccaaaacgccagatatttgtaaagacaattttcatatttaagccta 136  Q
    ||||||||| ||||| |||||||||||||||||| |  ||| |||| ||||||||||||||    
T  2395213 ttatagggactaaaatcaaaacgccagatatttgcagtgaccatttccatatttaagccta 2395153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 135
Target Start/End: Complemental strand, 13572528 - 13572469
Alignment:
Q  76 ttatagggaataaaaccaaaacgccagatatttgtaaagacaattttcatatttaagcct 135  Q
    ||||||||| |||||| ||||||||||||||||| |  ||| |||| |||||||||||||    
T  13572528 ttatagggactaaaactaaaacgccagatatttgcagggaccatttccatatttaagcct 13572469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 133
Target Start/End: Original strand, 14379440 - 14379497
Alignment:
Q  76 ttatagggaataaaaccaaaacgccagatatttgtaaagacaattttcatatttaagc 133  Q
    ||||||||| |||||||||||||| ||||||||| |  ||| |||| |||||||||||    
T  14379440 ttatagggactaaaaccaaaacgcaagatatttgcagggaccatttccatatttaagc 14379497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 109
Target Start/End: Original strand, 18369339 - 18369372
Alignment:
Q  76 ttatagggaataaaaccaaaacgccagatatttg 109  Q
    ||||||||| ||||||||||||||||||||||||    
T  18369339 ttatagggactaaaaccaaaacgccagatatttg 18369372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 135
Target Start/End: Complemental strand, 42705035 - 42704986
Alignment:
Q  86 taaaaccaaaacgccagatatttgtaaagacaattttcatatttaagcct 135  Q
    ||||| |||||||||||||||||| |  ||| ||||||||||||||||||    
T  42705035 taaaagcaaaacgccagatatttgcagggaccattttcatatttaagcct 42704986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 12806604 - 12806544
Alignment:
Q  76 ttatagggaataaaaccaaaacgccagatatttgtaaagacaattttcatatttaagccta 136  Q
    ||||||||| |||| ||||||||||| ||||||  || ||| |||| ||||||||||||||    
T  12806604 ttatagggactaaatccaaaacgccaaatatttacaaggaccatttccatatttaagccta 12806544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 76 - 135
Target Start/End: Original strand, 19661676 - 19661735
Alignment:
Q  76 ttatagggaataaaaccaaaacgccagatatttgtaaagacaattttcatatttaagcct 135  Q
    ||||||||| |||||||||||||||||||||||| || ||| |||| |||||||||||||    
T  19661676 ttatagggactaaaaccaaaacgccagatatttgcaaggaccatttccatatttaagcct 19661735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 137
Target Start/End: Original strand, 3345346 - 3345407
Alignment:
Q  76 ttatagggaataaaaccaaaacgccagatatttgtaaagacaattttcatatttaagcctaa 137  Q
    ||||||||| |||||||||||||||||||||||| |  ||| |||| |||||||||||||||    
T  3345346 ttatagggactaaaaccaaaacgccagatatttgcagggaccatttccatatttaagcctaa 3345407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 134
Target Start/End: Original strand, 30609193 - 30609251
Alignment:
Q  76 ttatagggaataaaaccaaaacgccagatatttgtaaagacaattttcatatttaagcc 134  Q
    ||||||||| |||||||||||| ||||||||||| |  ||| |||||||||||||||||    
T  30609193 ttatagggactaaaaccaaaacaccagatatttgcagggaccattttcatatttaagcc 30609251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 136
Target Start/End: Original strand, 28853812 - 28853872
Alignment:
Q  76 ttatagggaataaaaccaaaacgccagatatttgtaaagacaattttcatatttaagccta 136  Q
    ||||||||| ||||||||||| | ||||||||||||  ||| |||||||| ||||||||||    
T  28853812 ttatagggactaaaaccaaaatgtcagatatttgtagggactattttcatgtttaagccta 28853872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 136
Target Start/End: Complemental strand, 29819467 - 29819411
Alignment:
Q  80 agggaataaaaccaaaacgccagatatttgtaaagacaattttcatatttaagccta 136  Q
    ||||| |||||||||||||||||||||||| |  ||| |||| ||||||||||||||    
T  29819467 agggactaaaaccaaaacgccagatatttgcagggaccatttccatatttaagccta 29819411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 134
Target Start/End: Complemental strand, 28853536 - 28853482
Alignment:
Q  80 agggaataaaaccaaaacgccagatatttgtaaagacaattttcatatttaagcc 134  Q
    ||||| |||||||||||||||| |||||||||  ||| |||| ||||||||||||    
T  28853536 agggactaaaaccaaaacgccaaatatttgtagtgaccatttccatatttaagcc 28853482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 133
Target Start/End: Complemental strand, 5923882 - 5923825
Alignment:
Q  76 ttatagggaataaaaccaaaacgccagatatttgtaaagacaattttcatatttaagc 133  Q
    ||||||||| |||||||||||||| ||||||||| |  ||| |||| |||||||||||    
T  5923882 ttatagggactaaaaccaaaacgcaagatatttgcagggaccatttccatatttaagc 5923825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 136
Target Start/End: Original strand, 9571727 - 9571783
Alignment:
Q  80 agggaataaaaccaaaacgccagatatttgtaaagacaattttcatatttaagccta 136  Q
    ||||| |||||| |||| | |||||||||| || ||| |||||||||||||||||||    
T  9571727 agggactaaaactaaaatgtcagatatttgcaaggactattttcatatttaagccta 9571783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 137
Target Start/End: Complemental strand, 49499899 - 49499838
Alignment:
Q  76 ttatagggaataaaaccaaaacgccagatatttgtaaagacaattttcatatttaagcctaa 137  Q
    ||||||||| |||||||||||| ||||||||||| || ||| |||| |||||||||||||||    
T  49499899 ttatagggactaaaaccaaaacaccagatatttgcaaggaccatttccatatttaagcctaa 49499838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 76 - 135
Target Start/End: Complemental strand, 27934507 - 27934448
Alignment:
Q  76 ttatagggaataaaaccaaaacgccagatatttgtaaagacaattttcatatttaagcct 135  Q
    ||||||||| |||||||||||||||||||||||| |  ||| |||| |||||||||||||    
T  27934507 ttatagggactaaaaccaaaacgccagatatttgcagggaccatttccatatttaagcct 27934448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 136
Target Start/End: Original strand, 46962909 - 46962969
Alignment:
Q  76 ttatagggaataaaaccaaaacgccagatatttgtaaagacaattttcatatttaagccta 136  Q
    ||||||||| ||||||||| |||||||||||||| |  ||| |||| ||||||||||||||    
T  46962909 ttatagggactaaaaccaatacgccagatatttgcagggaccatttccatatttaagccta 46962969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 134
Target Start/End: Complemental strand, 52835601 - 52835543
Alignment:
Q  76 ttatagggaataaaaccaaaacgccagatatttgtaaagacaattttcatatttaagcc 134  Q
    ||||||||| ||||| |||||||||||||||||| |  ||| |||| ||||||||||||    
T  52835601 ttatagggactaaaatcaaaacgccagatatttgcagggaccatttccatatttaagcc 52835543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 109
Target Start/End: Complemental strand, 16056405 - 16056372
Alignment:
Q  76 ttatagggaataaaaccaaaacgccagatatttg 109  Q
    ||||||||| ||||||||||||||||||||||||    
T  16056405 ttatagggactaaaaccaaaacgccagatatttg 16056372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 136
Target Start/End: Original strand, 29838621 - 29838681
Alignment:
Q  76 ttatagggaataaaaccaaaacgccagatatttgtaaagacaattttcatatttaagccta 136  Q
    ||||| ||| |||||||||||||| ||||||||| |  ||| |||| ||||||||||||||    
T  29838621 ttatatggactaaaaccaaaacgcaagatatttgcagggaccatttccatatttaagccta 29838681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 33162584 - 33162624
Alignment:
Q  13 aaaatatcaaagaccaaaaccaaatatccaatatttgcaag 53  Q
    |||||||||| |||||||||||||||| | |||||||||||    
T  33162584 aaaatatcaaggaccaaaaccaaatattctatatttgcaag 33162624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 132
Target Start/End: Original strand, 42093721 - 42093777
Alignment:
Q  76 ttatagggaataaaaccaaaacgccagatatttgtaaagacaattttcatatttaag 132  Q
    ||||||||| ||||| |||||||||||||||||| |  ||| |||| ||||||||||    
T  42093721 ttatagggactaaaatcaaaacgccagatatttgcagggaccatttccatatttaag 42093777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 135
Target Start/End: Original strand, 55092541 - 55092593
Alignment:
Q  83 gaataaaaccaaaacgccagatatttgtaaagacaattttcatatttaagcct 135  Q
    |||||||||||||| | |||||||||| |  ||| ||||||||||||||||||    
T  55092541 gaataaaaccaaaatgtcagatatttggagggactattttcatatttaagcct 55092593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0817 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0817
Description:

Target: scaffold0817; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 76 - 135
Target Start/End: Complemental strand, 4039 - 3980
Alignment:
Q  76 ttatagggaataaaaccaaaacgccagatatttgtaaagacaattttcatatttaagcct 135  Q
    ||||||||| |||||||||||||||||||||||| |  ||| |||| |||||||||||||    
T  4039 ttatagggactaaaaccaaaacgccagatatttgcagggaccatttccatatttaagcct 3980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 80 - 135
Target Start/End: Original strand, 40729394 - 40729449
Alignment:
Q  80 agggaataaaaccaaaacgccagatatttgtaaagacaattttcatatttaagcct 135  Q
    ||||| ||||||||||| | |||||||||| |||||| ||||||||||||||||||    
T  40729394 agggactaaaaccaaaatgtcagatatttgcaaagactattttcatatttaagcct 40729449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 76 - 135
Target Start/End: Original strand, 44219621 - 44219680
Alignment:
Q  76 ttatagggaataaaaccaaaacgccagatatttgtaaagacaattttcatatttaagcct 135  Q
    |||||||||||||||||||||||| ||||||||| |  ||| |||| |||||||||||||    
T  44219621 ttatagggaataaaaccaaaacgcaagatatttgcagggactatttccatatttaagcct 44219680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 134
Target Start/End: Original strand, 34595646 - 34595704
Alignment:
Q  76 ttatagggaataaaaccaaaacgccagatatttgtaaagacaattttcatatttaagcc 134  Q
    ||||||||| ||||||||||||| |||||||||  |  ||| |||||||||||||||||    
T  34595646 ttatagggactaaaaccaaaacgtcagatatttacagggaccattttcatatttaagcc 34595704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 19476449 - 19476389
Alignment:
Q  76 ttatagggaataaaaccaaaacgccagatatttgtaaagacaattttcatatttaagccta 136  Q
    ||||||||| |||||||||||||||| ||||| | |  ||| |||| ||||||||||||||    
T  19476449 ttatagggactaaaaccaaaacgccaaatattggcagggaccatttccatatttaagccta 19476389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 44483285 - 44483225
Alignment:
Q  76 ttatagggaataaaaccaaaacgccagatatttgtaaagacaattttcatatttaagccta 136  Q
    ||||||||| ||||||||||||| |||||||||| |  ||| |||| |||||| |||||||    
T  44483285 ttatagggactaaaaccaaaacgtcagatatttgcagggaccatttccatattaaagccta 44483225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 76 - 135
Target Start/End: Complemental strand, 12322148 - 12322089
Alignment:
Q  76 ttatagggaataaaaccaaaacgccagatatttgtaaagacaattttcatatttaagcct 135  Q
    ||||||||| ||||||||||||| |||||||||  | |||| ||||||||||||||||||    
T  12322148 ttatagggactaaaaccaaaacgtcagatatttacagagaccattttcatatttaagcct 12322089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 76 - 135
Target Start/End: Original strand, 20062125 - 20062184
Alignment:
Q  76 ttatagggaataaaaccaaaacgccagatatttgtaaagacaattttcatatttaagcct 135  Q
    ||||||||| |||||||||||||||||||||||| |  ||| |||| |||||||||||||    
T  20062125 ttatagggactaaaaccaaaacgccagatatttgcagggaccatttccatatttaagcct 20062184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 136
Target Start/End: Original strand, 14602335 - 14602395
Alignment:
Q  76 ttatagggaataaaaccaaaacgccagatatttgtaaagacaattttcatatttaagccta 136  Q
    ||||||||| ||||||||||| | |||||||||| |  ||| |||||||||||||||||||    
T  14602335 ttatagggattaaaaccaaaatgtcagatatttgcagggactattttcatatttaagccta 14602395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 80 - 135
Target Start/End: Complemental strand, 37172300 - 37172245
Alignment:
Q  80 agggaataaaaccaaaacgccagatatttgtaaagacaattttcatatttaagcct 135  Q
    ||||| ||||||||||| | |||||||||| | |||| ||||||||||||||||||    
T  37172300 agggactaaaaccaaaatgacagatatttgcagagactattttcatatttaagcct 37172245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 137
Target Start/End: Complemental strand, 33613 - 33552
Alignment:
Q  76 ttatagggaataaaaccaaaacgccagatatttgtaaagacaattttcatatttaagcctaa 137  Q
    ||||||||| ||||||||||||| |||||||||| |  ||  || |||||||||||||||||    
T  33613 ttatagggactaaaaccaaaacgtcagatatttgcagggatcatgttcatatttaagcctaa 33552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 137
Target Start/End: Original strand, 33888 - 33945
Alignment:
Q  80 agggaataaaaccaaaacgccagatatttgtaaagacaattttcatatttaagcctaa 137  Q
    ||||| ||||||||||| | |||||||||||| |||  |||||| |||||||||||||    
T  33888 agggactaaaaccaaaatgtcagatatttgtagagattattttcttatttaagcctaa 33945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 137
Target Start/End: Original strand, 33619223 - 33619284
Alignment:
Q  76 ttatagggaataaaaccaaaacgccagatatttgtaaagacaattttcatatttaagcctaa 137  Q
    ||||||| | |||||||||||| ||||||||||| |  ||| |||| |||||||||||||||    
T  33619223 ttataggaactaaaaccaaaacaccagatatttgcagggaccatttccatatttaagcctaa 33619284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 28031703 - 28031643
Alignment:
Q  76 ttatagggaataaaaccaaaacgccagatatttgtaaagacaattttcatatttaagccta 136  Q
    ||||| ||| |||||| ||||||||||||||||| |  ||| |||| ||||||||||||||    
T  28031703 ttataaggactaaaactaaaacgccagatatttgcagggaccatttccatatttaagccta 28031643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 137
Target Start/End: Complemental strand, 50616994 - 50616934
Alignment:
Q  77 tatagggaataaaaccaaaacgccagatatttgtaaagacaattttcatatttaagcctaa 137  Q
    |||| ||| ||||||||| |||||||||||||| |  ||| |||| |||||||||||||||    
T  50616994 tataaggactaaaaccaatacgccagatatttgcagggaccatttccatatttaagcctaa 50616934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 137
Target Start/End: Complemental strand, 50624821 - 50624761
Alignment:
Q  77 tatagggaataaaaccaaaacgccagatatttgtaaagacaattttcatatttaagcctaa 137  Q
    |||| ||| ||||||||| |||||||||||||| |  ||| |||| |||||||||||||||    
T  50624821 tataaggactaaaaccaatacgccagatatttgcagggaccatttccatatttaagcctaa 50624761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 136
Target Start/End: Original strand, 50625095 - 50625151
Alignment:
Q  80 agggaataaaaccaaaacgccagatatttgtaaagacaattttcatatttaagccta 136  Q
    ||||| ||||||||||| | |||||||||| |  ||| |||||||||||||||||||    
T  50625095 agggactaaaaccaaaatgtcagatatttgcagggactattttcatatttaagccta 50625151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 134
Target Start/End: Complemental strand, 73989 - 73931
Alignment:
Q  76 ttatagggaataaaaccaaaacgccagatatttgtaaagacaattttcatatttaagcc 134  Q
    ||||||||||||||||||||||||| |||||||| |  ||| |||| ||||||||||||    
T  73989 ttatagggaataaaaccaaaacgccggatatttgcagggaccatttccatatttaagcc 73931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 135
Target Start/End: Original strand, 37062 - 37121
Alignment:
Q  76 ttatagggaataaaaccaaaacgccagatatttgtaaagacaattttcatatttaagcct 135  Q
    ||||||||| |||||||||||||| ||||||||| |  ||| |||| |||||||||||||    
T  37062 ttatagggactaaaaccaaaacgctagatatttgcagggaccatttccatatttaagcct 37121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 36819 - 36762
Alignment:
Q  80 agggaataaaaccaaaacgccagatatttgtaaagacaattttcatatttaagcctaa 137  Q
    ||||| ||||||||||| | |||||||||| |  ||| ||||||||||||||||||||    
T  36819 agggactaaaaccaaaatgtcagatatttgcagggactattttcatatttaagcctaa 36762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 134
Target Start/End: Original strand, 43605 - 43663
Alignment:
Q  76 ttatagggaataaaaccaaaacgccagatatttgtaaagacaattttcatatttaagcc 134  Q
    ||||||| | |||||||||||||||||||||||| ||  || |||| ||||||||||||    
T  43605 ttataggaactaaaaccaaaacgccagatatttgcaagaaccatttccatatttaagcc 43663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University