View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13037_low_41 (Length: 249)
Name: NF13037_low_41
Description: NF13037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13037_low_41 |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 3364833 - 3364586
Alignment:
| Q |
1 |
aaaatatgttctaggaaaatatcttgctttgaagatttgagagac-------------ttcgtcaagagattccatccttgctttgcgaccattgccaaa |
87 |
Q |
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| T |
3364833 |
aaaatatgttctaggaaaatatcttgctttgaagatttgagagaccagtaaatttgggttcgtcaagagattccatccttgctttgcgaccattgccaaa |
3364734 |
T |
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| Q |
88 |
ttaaaagcttgaaaatttcgaaaacccataccaccaaaagctttaggacaccctaacctctcccatgccatccatttgataccaccggtatcaccacctc |
187 |
Q |
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| T |
3364733 |
ttaaaatcttgaaaactgcgaaaacccataccaccaaaagctttaggacacgctaacctctcccatgccatccatttgataccaccagtatcaccacctc |
3364634 |
T |
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| Q |
188 |
cacccaaccatctctcgtggatctgatgccaagaccgccaatgttctt |
235 |
Q |
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| T |
3364633 |
cacccaaccatctctcgcggatctaatgccaagaccgccaatgttctt |
3364586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 46 - 197
Target Start/End: Complemental strand, 32376860 - 32376709
Alignment:
| Q |
46 |
ttcgtcaagagattccatccttgctttgcgaccattgccaaattaaaagcttgaaaatttcgaaaacccataccaccaaaagctttaggacaccctaacc |
145 |
Q |
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||||| |||| |||||||||||||| || |||||||||||||||||||||||||||||| | |||| |||||||||||| |||||||||||| |||||| |
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| T |
32376860 |
ttcgttaagaaattccatccttgctatgtgaccattgccaaattaaaagcttgaaaattgcaaaaatccataccaccaagagctttaggacatgctaacc |
32376761 |
T |
|
| Q |
146 |
tctcccatgccatccatttgataccaccggtatcaccacctccacccaacca |
197 |
Q |
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| T |
32376760 |
tctctcatgccatccatttgataccaccattaccaccaccgccaccccacca |
32376709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 46 - 137
Target Start/End: Complemental strand, 18719978 - 18719887
Alignment:
| Q |
46 |
ttcgtcaagagattccatccttgctttgcgaccattgccaaattaaaagcttgaaaatttcgaaaacccataccaccaaaagctttaggaca |
137 |
Q |
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||||| |||| ||||||||||||||||| ||||||||||||||||||||||| ||| || ||||||||||||||| ||| |||||||||||| |
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| T |
18719978 |
ttcgttaagaaattccatccttgctttgtgaccattgccaaattaaaagcttaaaacttgcgaaaacccataccatcaagagctttaggaca |
18719887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 125
Target Start/End: Complemental strand, 7126101 - 7126035
Alignment:
| Q |
59 |
tccatccttgctttgcgaccattgccaaattaaaagcttgaaaatttcgaaaacccataccaccaaa |
125 |
Q |
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||||||||||||| || ||||| || | ||||||||||| ||||||||||| ||||| |||||||| |
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| T |
7126101 |
tccatccttgcttagctaccatagcaagattaaaagctttgaaatttcgaaaccccattccaccaaa |
7126035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 125
Target Start/End: Original strand, 43319321 - 43319387
Alignment:
| Q |
59 |
tccatccttgctttgcgaccattgccaaattaaaagcttgaaaatttcgaaaacccataccaccaaa |
125 |
Q |
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||||||||||||| || ||||| || | ||||||||||| ||||||||||| ||||| |||||||| |
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| T |
43319321 |
tccatccttgcttggctaccatagcgagattaaaagctttgaaatttcgaaaccccattccaccaaa |
43319387 |
T |
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