View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13037_low_45 (Length: 239)
Name: NF13037_low_45
Description: NF13037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13037_low_45 |
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Alignment Details
Target: chr3 (Bit Score: 169; Significance: 9e-91; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 28 - 221
Target Start/End: Complemental strand, 46178213 - 46178014
Alignment:
| Q |
28 |
tgattgtgtaatttgtgtcctgaacttttaaattttaaacaatcacagtcattggaatttggaaa------atgtgtgaaaagtaaagcataaactccat |
121 |
Q |
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| T |
46178213 |
tgattgtgtaatttgtgtcctgaacttttaaattttaaacaatcacaatcattggaatttggaaacaaaaaatgtgtgaaaagtaaagcataaactccat |
46178114 |
T |
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| Q |
122 |
tgatggaggaagaaaactctattctcattatgttatttcaaacaaaattgaaattacaagtagtgtagaaagagtatatatagcacctatatcccctcct |
221 |
Q |
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| T |
46178113 |
tgatggaggaagaaaactctattctcattatgttatttcaaacaaaattgaaattacaagtagtgtagaaagagtatatatagcacctacatcccctcct |
46178014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 92 - 136
Target Start/End: Complemental strand, 54722397 - 54722353
Alignment:
| Q |
92 |
aatgtgtgaaaagtaaagcataaactccattgatggaggaagaaa |
136 |
Q |
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| T |
54722397 |
aatgtgtgaaaagtatagcatacactccattgatggaggaagaaa |
54722353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 207
Target Start/End: Original strand, 21212644 - 21212676
Alignment:
| Q |
175 |
ttacaagtagtgtagaaagagtatatatagcac |
207 |
Q |
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| T |
21212644 |
ttacaagtagtgtaggaagagtatatatagcac |
21212676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 24812093 - 24812039
Alignment:
| Q |
96 |
tgtgaaaagtaaagcataaactccattgatggaggaagaaaactctattctcatt |
150 |
Q |
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| T |
24812093 |
tgtgagaagtatagcataaactccattgatagaggaagaaaactttattctcatt |
24812039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 92 - 136
Target Start/End: Complemental strand, 5293993 - 5293949
Alignment:
| Q |
92 |
aatgtgtgaaaagtaaagcataaactccattgatggaggaagaaa |
136 |
Q |
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| T |
5293993 |
aatgtgtgaaaagtatagcatacactccattgatggaggaagaaa |
5293949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 92 - 136
Target Start/End: Complemental strand, 5298545 - 5298501
Alignment:
| Q |
92 |
aatgtgtgaaaagtaaagcataaactccattgatggaggaagaaa |
136 |
Q |
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| T |
5298545 |
aatgtgtgaaaagtatagcatacactccattgatggaggaagaaa |
5298501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 130 - 215
Target Start/End: Original strand, 2673666 - 2673752
Alignment:
| Q |
130 |
gaagaaaactctattctcattatgttatttcaaacaaaattgaaattacaa-gtagtgtagaaagagtatatatagcacctatatcc |
215 |
Q |
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|||||||||| |||||||||| | ||||||| |||||| | ||| ||||| ||||||||| || |||| ||||||||||||||||| |
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| T |
2673666 |
gaagaaaactttattctcattgtaatatttcacacaaaactaaaaatacaaagtagtgtagcaatagtacatatagcacctatatcc |
2673752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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