View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13037_low_8 (Length: 494)

Name: NF13037_low_8
Description: NF13037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13037_low_8
NF13037_low_8
[»] chr6 (8 HSPs)
chr6 (1-314)||(20756896-20757199)
chr6 (342-483)||(20757217-20757356)
chr6 (165-248)||(20769228-20769312)
chr6 (391-473)||(15107139-15107221)
chr6 (391-473)||(24954683-24954765)
chr6 (417-473)||(17111470-17111526)
chr6 (422-473)||(17111646-17111697)
chr6 (1-60)||(20769123-20769182)
[»] chr4 (3 HSPs)
chr4 (422-483)||(29546494-29546555)
chr4 (422-475)||(25708146-25708199)
chr4 (405-476)||(11773839-11773910)
[»] chr5 (5 HSPs)
chr5 (388-476)||(32199989-32200076)
chr5 (417-475)||(19847840-19847898)
chr5 (412-483)||(23409617-23409688)
chr5 (388-434)||(25096133-25096179)
chr5 (388-434)||(25154103-25154149)
[»] chr7 (3 HSPs)
chr7 (415-473)||(21839472-21839530)
chr7 (412-470)||(31720248-31720306)
chr7 (406-475)||(27545009-27545078)
[»] chr3 (4 HSPs)
chr3 (388-476)||(30406252-30406341)
chr3 (1-60)||(48866907-48866966)
chr3 (415-473)||(3440370-3440428)
chr3 (390-438)||(1097837-1097885)
[»] chr2 (3 HSPs)
chr2 (412-476)||(9547843-9547907)
chr2 (417-475)||(40489786-40489844)
chr2 (412-476)||(40516282-40516346)
[»] chr1 (3 HSPs)
chr1 (403-483)||(12656899-12656979)
chr1 (412-476)||(15223318-15223382)
chr1 (417-475)||(5182117-5182175)
[»] scaffold0128 (1 HSPs)
scaffold0128 (412-470)||(42067-42125)


Alignment Details
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 20756896 - 20757199
Alignment:
Q  1 tgaagatgcaagcaattaattggtggatctcgtgggaagtcttgaatctaattttcattgnnnnnnnnncttttcatttattcaataaacttacaaaatt 100  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||          |||||||||||| ||| |||||||||||||    
T  20756896 tgaagatgcaagcaattaattggtggacctcgtggaaagtcttgaatctaattttcattgttttt-----ttttcatttatttaattaacttacaaaatt 20756990  T
Q  101 aatttccctggtttccctgttatatccaattgatcaactacaaatatataataagaggtaggggaaaataaaataaaatgtgaacgtgcggttcttagag 200  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20756991 aatttccctggtttccctgttatatccagttgatcaactacaaatat-taataagaggtaggggaaaataaaataaaatgtgaacgtgcggttcttagag 20757089  T
Q  201 atacatagtcaaaatgcacaaaatacatgtgcaatggaataaaatatagggcttttttaaaagattaaaatgagatatataattgcagagtatcttccta 300  Q
    |||||||||||||| |||||||||||||    |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  20757090 atacatagtcaaaacgcacaaaatacat----aatggaataaaatatagggcttttttaaaagattaaaatgaggtacataattgcagagtatcttccta 20757185  T
Q  301 gtacaagatgtatc 314  Q
    ||||||||||||||    
T  20757186 gtacaagatgtatc 20757199  T

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Target: chr6; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 342 - 483
Target Start/End: Original strand, 20757217 - 20757356
Alignment:
Q  342 tatacaacaagtgttcaacatttagccaatacccaaacataaaaaagagttttctttgctacgaaaaagtctatcatttctttccttccaaatcacccaa 441  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  20757217 tatacaacaagtgttcaacatt-agccaatactcaaacataaaaaatagttttctttgctacgaaaa-gtctatcatttctttccttccaaatcacccaa 20757314  T
Q  442 aaactatcaaaccagatcaaaaacatgaaagaacatattgat 483  Q
     |||||||||||||||||||||||||||||||||| ||||||    
T  20757315 gaactatcaaaccagatcaaaaacatgaaagaacacattgat 20757356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 165 - 248
Target Start/End: Original strand, 20769228 - 20769312
Alignment:
Q  165 aaaataaaataaaatgtgaacgtgcggttcttagagatacatagtcaaaatgcacaaaa-tacatgtgcaatggaataaaatata 248  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||| |||||||||| ||||||||||||||    
T  20769228 aaaataaaataaaatgtgaacgtgcggttcttagagatatatagtcaaattgcaaaaaactacatgtgcactggaataaaatata 20769312  T

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Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 391 - 473
Target Start/End: Complemental strand, 15107221 - 15107139
Alignment:
Q  391 ttttctttgctacgaaaaagtctatcatttctttccttccaaatcacccaaaaactatcaaaccagatcaaaaacatgaaaga 473  Q
    |||||||||| ||||||||  ||||||||||||||||||||||||| |||| ||||  ||||||| ||||| |||||||||||    
T  15107221 ttttctttgccacgaaaaatcctatcatttctttccttccaaatcatccaagaactcgcaaaccaaatcaataacatgaaaga 15107139  T

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Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 391 - 473
Target Start/End: Original strand, 24954683 - 24954765
Alignment:
Q  391 ttttctttgctacgaaaaagtctatcatttctttccttccaaatcacccaaaaactatcaaaccagatcaaaaacatgaaaga 473  Q
    |||||||||| |||||| |  |||||||||||||||||||||||||||||| || || ||||||| ||||| |||||||||||    
T  24954683 ttttctttgccacgaaatatcctatcatttctttccttccaaatcacccaagaagtagcaaaccaaatcaataacatgaaaga 24954765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 417 - 473
Target Start/End: Complemental strand, 17111526 - 17111470
Alignment:
Q  417 atttctttccttccaaatcacccaaaaactatcaaaccagatcaaaaacatgaaaga 473  Q
    |||| |||||||||||||||||||| ||||  ||||| |||||||||||||||||||    
T  17111526 atttatttccttccaaatcacccaagaactcgcaaacaagatcaaaaacatgaaaga 17111470  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 422 - 473
Target Start/End: Complemental strand, 17111697 - 17111646
Alignment:
Q  422 tttccttccaaatcacccaaaaactatcaaaccagatcaaaaacatgaaaga 473  Q
    |||||||||||||||||||| ||||  ||||| |||| ||||||||||||||    
T  17111697 tttccttccaaatcacccaagaacttgcaaacaagataaaaaacatgaaaga 17111646  T

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Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 20769123 - 20769182
Alignment:
Q  1 tgaagatgcaagcaattaattggtggatctcgtgggaagtcttgaatctaattttcattg 60  Q
    ||||||||||| |||||||||| |||| || ||||||||| |||||||||  ||||||||    
T  20769123 tgaagatgcaaacaattaattgatggaccttgtgggaagtgttgaatctagctttcattg 20769182  T

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Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 422 - 483
Target Start/End: Complemental strand, 29546555 - 29546494
Alignment:
Q  422 tttccttccaaatcacccaaaaactatcaaaccagatcaaaaacatgaaagaacatattgat 483  Q
    |||||||| ||||||||||||||||| ||||||||||||| ||||||||||||| |||||||    
T  29546555 tttccttctaaatcacccaaaaactagcaaaccagatcaataacatgaaagaacgtattgat 29546494  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 422 - 475
Target Start/End: Complemental strand, 25708199 - 25708146
Alignment:
Q  422 tttccttccaaatcacccaaaaactatcaaaccagatcaaaaacatgaaagaac 475  Q
    |||| ||||||||||||||| ||||| ||||| ||||| |||||||||||||||    
T  25708199 tttctttccaaatcacccaagaactagcaaactagatctaaaacatgaaagaac 25708146  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 405 - 476
Target Start/End: Complemental strand, 11773910 - 11773839
Alignment:
Q  405 aaaaagtctatcatttctttccttccaaatcacccaaaaactatcaaaccagatcaaaaacatgaaagaaca 476  Q
    |||||||||||||||| |||||||| |||||||| ||   ||| ||||||| ||||||  ||||||||||||    
T  11773910 aaaaagtctatcatttatttccttctaaatcaccgaagcgctagcaaaccaaatcaaatgcatgaaagaaca 11773839  T

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Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 388 - 476
Target Start/End: Complemental strand, 32200076 - 32199989
Alignment:
Q  388 gagttttctttgctacgaaaaagtctatcatttctttccttccaaatcacccaaaaactatcaaaccagatcaaaaacatgaaagaaca 476  Q
    |||||||||||||| |  ||||| |||||||||||||||||||||||||  ||| ||||| ||||||| |||||| |||||||||||||    
T  32200076 gagttttctttgcttcttaaaagcctatcatttctttccttccaaatca-tcaagaactagcaaaccaaatcaaagacatgaaagaaca 32199989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 417 - 475
Target Start/End: Complemental strand, 19847898 - 19847840
Alignment:
Q  417 atttctttccttccaaatcacccaaaaactatcaaaccagatcaaaaacatgaaagaac 475  Q
    ||||||||||||||||||||||||| ||||| ||||||| || ||||||||||| ||||    
T  19847898 atttctttccttccaaatcacccaagaactagcaaaccaaattaaaaacatgaaggaac 19847840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 412 - 483
Target Start/End: Complemental strand, 23409688 - 23409617
Alignment:
Q  412 ctatcatttctttccttccaaatcacccaaaaactatcaaaccagatcaaaaacatgaaagaacatattgat 483  Q
    ||||||||| |||||||||||||||  ||| ||||| |||| |||||||||  |||||||||||| ||||||    
T  23409688 ctatcatttatttccttccaaatcattcaagaactagcaaatcagatcaaatgcatgaaagaacacattgat 23409617  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 388 - 434
Target Start/End: Original strand, 25096133 - 25096179
Alignment:
Q  388 gagttttctttgctacgaaaaagtctatcatttctttccttccaaat 434  Q
    |||||||||||| | || |||||||||||||| ||||||||||||||    
T  25096133 gagttttctttggttcggaaaagtctatcattcctttccttccaaat 25096179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 388 - 434
Target Start/End: Original strand, 25154103 - 25154149
Alignment:
Q  388 gagttttctttgctacgaaaaagtctatcatttctttccttccaaat 434  Q
    |||||||||||| | || |||||||||||||| ||||||||||||||    
T  25154103 gagttttctttggttcggaaaagtctatcattcctttccttccaaat 25154149  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 415 - 473
Target Start/End: Original strand, 21839472 - 21839530
Alignment:
Q  415 tcatttctttccttccaaatcacccaaaaactatcaaaccagatcaaaaacatgaaaga 473  Q
    ||||||||||||||| ||||||| ||| ||||| |||||||||||||||||||||||||    
T  21839472 tcatttctttccttctaaatcactcaagaactagcaaaccagatcaaaaacatgaaaga 21839530  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 412 - 470
Target Start/End: Complemental strand, 31720306 - 31720248
Alignment:
Q  412 ctatcatttctttccttccaaatcacccaaaaactatcaaaccagatcaaaaacatgaa 470  Q
    ||||||||||||||||| |||||||||||| ||||  ||||||| ||||||| ||||||    
T  31720306 ctatcatttctttcctttcaaatcacccaataacttgcaaaccatatcaaaatcatgaa 31720248  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 406 - 475
Target Start/End: Complemental strand, 27545078 - 27545009
Alignment:
Q  406 aaaagtctatcatttctttccttccaaatcacccaaaaactatcaaaccagatcaaaaacatgaaagaac 475  Q
    ||||||||||||||| ||| |||||||||||||||| | ||| ||||||| | ||||  |||||||||||    
T  27545078 aaaagtctatcatttttttgcttccaaatcacccaagagctagcaaaccaaaacaaatgcatgaaagaac 27545009  T

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Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 388 - 476
Target Start/End: Original strand, 30406252 - 30406341
Alignment:
Q  388 gagttttctttgctacgaaaaagtctatcatttctttccttccaaatcacccaaaaactatcaaa-ccagatcaaaaacatgaaagaaca 476  Q
    |||||||||||||  || ||||| ||| ||||| ||| |||||||||||||||| ||||  |||| ||||||||||||||||||||||||    
T  30406252 gagttttctttgcctcggaaaagcctaacatttatttgcttccaaatcacccaagaacttgcaaacccagatcaaaaacatgaaagaaca 30406341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 48866907 - 48866966
Alignment:
Q  1 tgaagatgcaagcaattaattggtggatctcgtgggaagtcttgaatctaattttcattg 60  Q
    ||||||| |||||||||||||||||||||  ||||||||| |||||| ||||||||||||    
T  48866907 tgaagatacaagcaattaattggtggatcatgtgggaagtgttgaatttaattttcattg 48866966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 415 - 473
Target Start/End: Complemental strand, 3440428 - 3440370
Alignment:
Q  415 tcatttctttccttccaaatcacccaaaaactatcaaaccagatcaaaaacatgaaaga 473  Q
    |||||||||||||| |||||||||||| ||||  ||||||||||||| |||||||||||    
T  3440428 tcatttctttcctttcaaatcacccaagaactcgcaaaccagatcaataacatgaaaga 3440370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 438
Target Start/End: Original strand, 1097837 - 1097885
Alignment:
Q  390 gttttctttgctacgaaaaagtctatcatttctttccttccaaatcacc 438  Q
    ||||||||| |  |||||||||||||||||| |||||||||||||||||    
T  1097837 gttttctttccctcgaaaaagtctatcatttttttccttccaaatcacc 1097885  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 412 - 476
Target Start/End: Original strand, 9547843 - 9547907
Alignment:
Q  412 ctatcatttctttccttccaaatcacccaaaaactatcaaaccagatcaaaaacatgaaagaaca 476  Q
    |||||||||||||||||||||||||| |||| |||| ||||| | |||||| |||||||||||||    
T  9547843 ctatcatttctttccttccaaatcactcaaacactagcaaacgaaatcaaagacatgaaagaaca 9547907  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 417 - 475
Target Start/End: Original strand, 40489786 - 40489844
Alignment:
Q  417 atttctttccttccaaatcacccaaaaactatcaaaccagatcaaaaacatgaaagaac 475  Q
    ||||||||||||||||||||| ||  ||||  |||||||||||||||||||||||||||    
T  40489786 atttctttccttccaaatcacgcaggaacttgcaaaccagatcaaaaacatgaaagaac 40489844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 412 - 476
Target Start/End: Original strand, 40516282 - 40516346
Alignment:
Q  412 ctatcatttctttccttccaaatcacccaaaaactatcaaaccagatcaaaaacatgaaagaaca 476  Q
    |||| ||||||||||||||||||||| ||| ||||  |||| ||||||||| |||||||||||||    
T  40516282 ctataatttctttccttccaaatcacgcaagaacttgcaaatcagatcaaagacatgaaagaaca 40516346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 403 - 483
Target Start/End: Complemental strand, 12656979 - 12656899
Alignment:
Q  403 cgaaaaagtctatcatttctttccttccaaatcacccaaaaactatcaaaccagatcaaaaacatgaaagaacatattgat 483  Q
    |||||||||||| ||||||||| ||||||||||| |||| ||||| ||||||| ||||||  |||||||||| | ||||||    
T  12656979 cgaaaaagtctaacatttcttttcttccaaatcatccaagaactagcaaaccaaatcaaatgcatgaaagaatacattgat 12656899  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 412 - 476
Target Start/End: Original strand, 15223318 - 15223382
Alignment:
Q  412 ctatcatttctttccttccaaatcacccaaaaactatcaaaccagatcaaaaacatgaaagaaca 476  Q
    ||||||||||||||||||||||| |||||| ||||  |||||||||||||| |||||||| ||||    
T  15223318 ctatcatttctttccttccaaattacccaagaacttgcaaaccagatcaaagacatgaaataaca 15223382  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 417 - 475
Target Start/End: Original strand, 5182117 - 5182175
Alignment:
Q  417 atttctttccttccaaatcacccaaaaactatcaaaccagatcaaaaacatgaaagaac 475  Q
    |||||||| |||||||||||||||| | ||| ||||||| ||||||  |||||||||||    
T  5182117 atttcttttcttccaaatcacccaagagctagcaaaccatatcaaatgcatgaaagaac 5182175  T

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Target: scaffold0128 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 412 - 470
Target Start/End: Complemental strand, 42125 - 42067
Alignment:
Q  412 ctatcatttctttccttccaaatcacccaaaaactatcaaaccagatcaaaaacatgaa 470  Q
    |||||||||||||||||||||||||| ||| ||||  | ||||||||||||| ||||||    
T  42125 ctatcatttctttccttccaaatcactcaagaacttgctaaccagatcaaaatcatgaa 42067  T

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