View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13038_high_1 (Length: 678)
Name: NF13038_high_1
Description: NF13038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13038_high_1 |
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| [»] scaffold0194 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 383; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 19 - 547
Target Start/End: Complemental strand, 25027792 - 25027270
Alignment:
| Q |
19 |
catatagcttctgctacatattcctcgagctgcagcagctgctattttaa-catgtttctcccatttcagcacaggttgacctgctgcaaattccgatat |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25027792 |
catatagcttctgctacatattcctcgagctgcagcagctgctattttaaacatgtttctcccatttcagcacaggttgacctgctgcaaattccgatat |
25027693 |
T |
|
| Q |
118 |
ttcatttaagacagtacaatcaaagctactnnnnnnn-tctcacgtatgaaacaatcttttaatgtaccaactgagaagtagtgttttatttacagtgta |
216 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25027692 |
ttcatttaagacagtacaatcaaagctactaaaaaaaatctcatgtatgaaacaatcttttaatgtaccaactgagaagtagtgttttatttacagtgta |
25027593 |
T |
|
| Q |
217 |
aatgaaaataaagggtattgttaaggacatggtcatgtacaagtatttttctgttatcttcactgttatttttcaggtattgttaaagaaaccaaatgcc |
316 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | || ||| | || || |||||||| |||||| |
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| T |
25027592 |
aatgaaaataaagggtattgttaaggacatggtcatgtacaagtatttttctgttttcttgaatgc-attatccaacta------aagaaaccgaatgcc |
25027500 |
T |
|
| Q |
317 |
catgatgtaggccactaatgatagtcccaattttgacctacttcactgttatctctctcccattaggaaaaattctttatacacagaaatacgtccacca |
416 |
Q |
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||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
25027499 |
catgatgtatgccactgatgatagtaccaattttgacctacttcactgttatctctctcccatcaggaaaaattctttatacacagaaatacgtccacca |
25027400 |
T |
|
| Q |
417 |
tctcccaaaagattcagagtccagaaatcaattggtgattgcagtagttatttttcataatgccgttctataatgctaagtaacttagattatattgggt |
516 |
Q |
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|||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |
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| T |
25027399 |
tctcccaaaagattcagagtccag-aatcaattggtggttgcagtagttatttttcataatgccgttctataataataagtaacttaggttatattgggt |
25027301 |
T |
|
| Q |
517 |
cttcctagataatgaattttcataatgaata |
547 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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| T |
25027300 |
cttcctagataatgaattttcataatgaata |
25027270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 603 - 639
Target Start/End: Complemental strand, 25027276 - 25027240
Alignment:
| Q |
603 |
atgaatatgtctattattggatgtccatccatcaccc |
639 |
Q |
| |
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|||||||| ||||||||||||||||||||||| |||| |
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| T |
25027276 |
atgaatatatctattattggatgtccatccattaccc |
25027240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0194 (Bit Score: 85; Significance: 4e-40; HSPs: 2)
Name: scaffold0194
Description:
Target: scaffold0194; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 37 - 276
Target Start/End: Original strand, 15408 - 15648
Alignment:
| Q |
37 |
tattcctcgagctgcagcagctgctattttaacatgtttctcccatttcagcacaggttgacc---tgctgcaaattccgatatttcatttaagacagta |
133 |
Q |
| |
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|||||||||||||||| ||||||| ||||||||| |||| ||||||| ||| ||||||||||| | ||||||||||| |||||||||| || ||| | |
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| T |
15408 |
tattcctcgagctgcaccagctgcgattttaacacgtttttcccattccagtacaggttgaccattttctgcaaattccaatatttcattcaacacaaca |
15507 |
T |
|
| Q |
134 |
caatcaaagctactnnnnnnntctcacgtatgaaacaatcttttaatgtaccaactgagaagtagtgttttatttacagtgtaaatgaaaataaagggta |
233 |
Q |
| |
|
|||||||| ||| | ||||| ||| |||||||||| |||||||||||||||||||| ||| | |||||| |||| |||||||||||||||| |
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| T |
15508 |
caatcaaaactattcaaaaaatctcatgtaagaaacaatctgttaatgtaccaactgagaaggagt--tacatttaccatgtagatgaaaataaagggta |
15605 |
T |
|
| Q |
234 |
ttgttaaggacatggtcatgtacaagtatttttctgttatctt |
276 |
Q |
| |
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|||||| |||| | ||||| |||||||||||||||||||||| |
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| T |
15606 |
ttgttagggacgtagtcatagacaagtatttttctgttatctt |
15648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0194; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 343 - 443
Target Start/End: Original strand, 15744 - 15845
Alignment:
| Q |
343 |
ccaattttgacctacttcactgttatctctctcccattaggaaaaattc-tttatacacagaaatacgtccaccatctcccaaaagattcagagtccaga |
441 |
Q |
| |
|
|||||||||| | |||||||| |||||||||||||| ||| ||||||| |||||||||||| | |||||| ||||||||||||||||||||| ||| |
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| T |
15744 |
ccaattttgagttgcttcactgctatctctctcccatcaggtaaaattcctttatacacagagccaaatccaccttctcccaaaagattcagagtcgaga |
15843 |
T |
|
| Q |
442 |
aa |
443 |
Q |
| |
|
|| |
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|
| T |
15844 |
aa |
15845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 602 - 647
Target Start/End: Complemental strand, 145546 - 145501
Alignment:
| Q |
602 |
tatgaatatgtctattattggatgtccatccatcacccttccacat |
647 |
Q |
| |
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||||||||| ||||||| ||||||||||||||| |||||||||||| |
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| T |
145546 |
tatgaatatatctattagtggatgtccatccattacccttccacat |
145501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 602 - 647
Target Start/End: Original strand, 25397916 - 25397961
Alignment:
| Q |
602 |
tatgaatatgtctattattggatgtccatccatcacccttccacat |
647 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||| | |||||||||| |
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| T |
25397916 |
tatgaatatatctattagtggatgtccatccattatccttccacat |
25397961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 602 - 647
Target Start/End: Original strand, 22746500 - 22746545
Alignment:
| Q |
602 |
tatgaatatgtctattattggatgtccatccatcacccttccacat |
647 |
Q |
| |
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||||||||| ||||| | ||||||||||||||| |||||||||||| |
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| T |
22746500 |
tatgaatatatctatcagtggatgtccatccattacccttccacat |
22746545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 602 - 647
Target Start/End: Original strand, 22748887 - 22748932
Alignment:
| Q |
602 |
tatgaatatgtctattattggatgtccatccatcacccttccacat |
647 |
Q |
| |
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||||||||| ||||||| ||||||||||||||| |||||| ||||| |
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| T |
22748887 |
tatgaatatatctattagtggatgtccatccattaccctttcacat |
22748932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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