View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13038_high_21 (Length: 285)
Name: NF13038_high_21
Description: NF13038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13038_high_21 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 13 - 268
Target Start/End: Original strand, 50807950 - 50808205
Alignment:
| Q |
13 |
aaaatatgattgtgagtggtttcaaaaattccaaatcatggtttcaaaaattccaaatcacgtaacatgccattgcacatgtttatcaaaggtctagaaa |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50807950 |
aaaatatgattgtgagtggtttcaaaaattccaaatcatggtttcaaaaattccaaatcacgtaacatgccattgcacatgtttatcaaaggtctagaaa |
50808049 |
T |
|
| Q |
113 |
agttacaaaccaattgtttagcatactttaatttcaggaatcaaacttgaagtctgaaagtaaagcaatgcaaagcctaaaattcaaaacttaatgttgt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50808050 |
agttacaaaccaattgtttagcatactttaatttcaggaatcaaacttgaagtctgaaagtaaagcaatgcaaagcctaaaattcaaaacttaatgttgt |
50808149 |
T |
|
| Q |
213 |
tgcacatgggaatcccaatttggaatcacaaccaaatgaatgtcaacccaattttt |
268 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50808150 |
tgcacatgggaatcccaatttggaatcacaaccaaatgaatgtcaacccaattttt |
50808205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 68 - 268
Target Start/End: Complemental strand, 50867858 - 50867658
Alignment:
| Q |
68 |
aatcacgtaacatgccattgcacatgtttatcaaaggtctagaaaagttacaaaccaattgtttagcatactttaatttcaggaatcaaacttgaagtct |
167 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50867858 |
aatcatgtaacatgccattgaacatgtttatcaaaggtctagaaaagttacaaaccaattgtttagcatactttaatttcaggaatcaaacttgaagtct |
50867759 |
T |
|
| Q |
168 |
gaaagtaaagcaatgcaaagcctaaaattcaaaacttaatgttgttgcacatgggaatcccaatttggaatcacaaccaaatgaatgtcaacccaatttt |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50867758 |
gaaagtaaagcaatgcaaagcctaaaattcaaaacttaatgttgttgcacatgggaatcccaatttggaatcacaaccaaatgaatgtcaacccaatttt |
50867659 |
T |
|
| Q |
268 |
t |
268 |
Q |
| |
|
| |
|
|
| T |
50867658 |
t |
50867658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 50867928 - 50867886
Alignment:
| Q |
13 |
aaaatatgattgtgagtggtttcaaaaattccaaatcatggtt |
55 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50867928 |
aaaatatgattgtgagtggtttcaaaaattccaaatcatggtt |
50867886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 68 - 268
Target Start/End: Complemental strand, 19055412 - 19055212
Alignment:
| Q |
68 |
aatcacgtaacatgccattgcacatgtttatcaaaggtctagaaaagttacaaaccaattgtttagcatactttaatttcaggaatcaaacttgaagtct |
167 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19055412 |
aatcatgtaacatgccattgaacatgtttatcaaaggtctagaaaagttacaaaccaattgtttagcatactttaatttcaggaatcaaacttgaagtct |
19055313 |
T |
|
| Q |
168 |
gaaagtaaagcaatgcaaagcctaaaattcaaaacttaatgttgttgcacatgggaatcccaatttggaatcacaaccaaatgaatgtcaacccaatttt |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19055312 |
gaaagtaaagcaatgcaaagcctaaaattcaaaacttaatgttgttgcacatgggaatcccaatttggaatcacaaccaaatgaatgtcaacccaatttt |
19055213 |
T |
|
| Q |
268 |
t |
268 |
Q |
| |
|
| |
|
|
| T |
19055212 |
t |
19055212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 19055482 - 19055440
Alignment:
| Q |
13 |
aaaatatgattgtgagtggtttcaaaaattccaaatcatggtt |
55 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19055482 |
aaaatatgattgtgagtggtttcaaaaattccaaatcatggtt |
19055440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University