View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13038_high_24 (Length: 268)
Name: NF13038_high_24
Description: NF13038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13038_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 7 - 228
Target Start/End: Original strand, 12211448 - 12211673
Alignment:
| Q |
7 |
catcgggctctatcatgcttttagcttttaaacaaagggtagaaaatatctatttccttcctatatggttaacaaatgtgattcaattactcatcagcat |
106 |
Q |
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| T |
12211448 |
catcgggctctgtcatgcttttagctttttaacaaattgtagaaaatatttgtttccttcctatatgattaacaaatgtgattcaattactcatcagcat |
12211547 |
T |
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| Q |
107 |
taattaatattttagcatttgatttgttgaacagtccatagat----tattagtttaacaccttaattgacagtaaaagaagaaattgaaacggctcatt |
202 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||| |
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| T |
12211548 |
taattaatattttagcatttaatttgttgaacagtccatagattagatattagtttaacactttaattggcagtaaaagaagaaattgaaacggctcatt |
12211647 |
T |
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| Q |
203 |
aaatatagttggaaagaataggttca |
228 |
Q |
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| T |
12211648 |
aaatatagttggaaagaaaaggttca |
12211673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 92; Significance: 9e-45; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 19 - 151
Target Start/End: Original strand, 34228507 - 34228645
Alignment:
| Q |
19 |
tcatgcttttagcttttaaacaaagggtagaaa------atatctatttccttcctatatggttaacaaatgtgattcaattactcatcagcattaatta |
112 |
Q |
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| T |
34228507 |
tcatgcttttagcttttaaacaaagggtagaaattcatcatatctatttccttcctataggattaacaaatgtgattcaattactcatcaacattaatta |
34228606 |
T |
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| Q |
113 |
atattttagcatttgatttgttgaacagtccatagatta |
151 |
Q |
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| T |
34228607 |
atattttagcatttagtttgctgaacagtccatagatta |
34228645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 165 - 230
Target Start/End: Original strand, 34228884 - 34228950
Alignment:
| Q |
165 |
ttaattgacagtaaaagaagaaattgaaacggct-cattaaatatagttggaaagaataggttcagg |
230 |
Q |
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| T |
34228884 |
ttaattgactgtggaagaagaaattgaaatggcttcattaaatatagttggaaagaataggttcagg |
34228950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 8e-39; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 7 - 145
Target Start/End: Original strand, 33167585 - 33167729
Alignment:
| Q |
7 |
catcgggctctatcatgcttttagcttttaaacaaagggtagaaa------atatctatttccttcctatatggttaacaaatgtgattcaattactcat |
100 |
Q |
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|||| |||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||| | |||||||||||||||| |||||||| |
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| T |
33167585 |
catcaggctctgtcatgcttttagcttttaaacaaagggtagaaattcatcatatctctttccttcctataggattaacaaatgtgattcgattactcaa |
33167684 |
T |
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| Q |
101 |
cagcattaattaatattttagcatttgatttgttgaacagtccat |
145 |
Q |
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| T |
33167685 |
cagcattaattaatattttagcatttattttgctgaacagtccat |
33167729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 52 - 141
Target Start/End: Complemental strand, 43136598 - 43136509
Alignment:
| Q |
52 |
atatctatttccttcctatatggttaacaaatgtgattcaattactcatcagcattaattaatattttagcatttgatttgttgaacagt |
141 |
Q |
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| T |
43136598 |
atatctatttccttcctatattaataacaaatgtgatccgattactcatcgacattaattaatattttagcatttagtttgttgaacagt |
43136509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 180 - 240
Target Start/End: Original strand, 26273123 - 26273184
Alignment:
| Q |
180 |
agaagaaattgaaacggct-cattaaatatagttggaaagaataggttcaggcctggtagtt |
240 |
Q |
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| T |
26273123 |
agaagaaattgaaacgacttcattaaatatagttggaaagaataggttcaggcttgatagtt |
26273184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 182 - 229
Target Start/End: Original strand, 19952032 - 19952080
Alignment:
| Q |
182 |
aagaaattgaaacggct-cattaaatatagttggaaagaataggttcag |
229 |
Q |
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| T |
19952032 |
aagaaattgaaacggcttcgttaaatatagttggaaagaataggttcag |
19952080 |
T |
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