View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13038_low_10 (Length: 457)
Name: NF13038_low_10
Description: NF13038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13038_low_10 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 406; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 7 - 444
Target Start/End: Original strand, 43060669 - 43061105
Alignment:
| Q |
7 |
gatgtttgagacacttaaaaggatattgaggtatgatattttatatgcttgaatgatattgtgccttgcaattaaatcgggtcacaaatgactggaatct |
106 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
43060669 |
gatgtttgagacacttaaa-ggatattgaggtatgatattttatatgcttgaatgatattgtgccttgcaattaaatcgggtcacaaatcactggaatct |
43060767 |
T |
|
| Q |
107 |
ggtcacaaataaatttcatatgtttattgaggccattaatgcatatagggtttaaatgtagtagtttggtagttttagttttggtttggaatatttctat |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
43060768 |
ggtcacaaataaatttcatatgtttattgagggcattaatgcatatagggtttaaatgtagtagtttggtagttttagttttggtttggtatatttctat |
43060867 |
T |
|
| Q |
207 |
tactgaatcaggtgtttttcgcgtgtgtttttctgcataattcatagttggttcaaggtgattttctgcattggagcaagtttgaggtaattttctgcat |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
43060868 |
tactgaatcaggtgtttttcgcgtgtgtttttctgcataattcatagttggttcaaggtgattttctgcattggagcaactttgaggtaattttctgcat |
43060967 |
T |
|
| Q |
307 |
agttcaaagctggtttttggcatgtaggttgctgttgtgcagccgagctgttttgatgttgcagctggtacgtagccgcatttcttccgcacctgggttc |
406 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43060968 |
agttcaaagctggtttttggcatgtgggttgctgttgtgcagccgagctgtttcgatgttgcagctggtacgtagccgcatttcttccgcacctgggttc |
43061067 |
T |
|
| Q |
407 |
tgatacgactccaagtgttccagctgcgttatatcagt |
444 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43061068 |
tgatacgactccaagtgttccagctgcgttatatcagt |
43061105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 27 - 325
Target Start/End: Original strand, 1480342 - 1480637
Alignment:
| Q |
27 |
ggatattgaggtatgatattttatatgcttgaatgatattgtgccttgcaattaaatcgggtcacaaatgactggaatctggtcacaaataaatttcata |
126 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||||| ||| | |||||||||||| || | ||||| ||| |||||||||||||| |||||| |||| |
|
|
| T |
1480342 |
ggatattaaggtatgaaattttatatgcttgaatgatatcgtgtcatgcaattaaatctggccgcaaatcactagaatctggtcacaattaaattgcata |
1480441 |
T |
|
| Q |
127 |
tgtttattgaggccattaatgcatatagggtttaaatgtagtagtttggtagttttagttttggtttggaatatttctat---tactgaatcaggtgttt |
223 |
Q |
| |
|
|||||||||| ||||||| |||| ||||||||||||||||||||||||| ||||||| || || |||| ||||||||| ||||||| |
|
|
| T |
1480442 |
tgtttattgaaagcattaatacatagagggtttaaatgtagtagtttggta-----------ggtttggtatcttcctattactactgaatcgggtgttt |
1480530 |
T |
|
| Q |
224 |
ttcgcgtgtgtt-tttctgcataattcatagttggttcaaggtgattttctgc----attggagcaagtttgaggtaattttctgcatagttcaaagctg |
318 |
Q |
| |
|
| ||| ||||| ||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
1480531 |
tacgcacgtgttctttctgcataattcagagttggttcaaggtgattttatgcttaatttggagcaagtttgaggtaattttctgcaaagttcagagctg |
1480630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 118; Significance: 5e-60; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 27 - 325
Target Start/End: Original strand, 19180146 - 19180441
Alignment:
| Q |
27 |
ggatattgaggtatgatattttatatgcttgaatgatattgtgccttgcaattaaatcgggtcacaaatgactggaatctggtcacaaataaatttcata |
126 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||||| ||| |||||||||||||| || | ||||| ||| |||||||||||||| |||||| |||| |
|
|
| T |
19180146 |
ggatattaaggtatgaaattttatatgcttgaatgatatcgtgtcttgcaattaaatctggccgcaaatcactagaatctggtcacaattaaattgcata |
19180245 |
T |
|
| Q |
127 |
tgtttattgaggccattaatgcatatagggtttaaatgtagtagtttggtagttttagttttggtttggaatatttctat---tactgaatcaggtgttt |
223 |
Q |
| |
|
|||||||||| ||||||| |||| ||||||||||||||||||||||||| ||||||| || || |||| ||||||||| ||||||| |
|
|
| T |
19180246 |
tgtttattgaaagcattaatccatagagggtttaaatgtagtagtttggta-----------ggtttggtatcttcctattactactgaatcgggtgttt |
19180334 |
T |
|
| Q |
224 |
ttcgcgtgtgtt-tttctgcataattcatagttggttcaaggtgattttctgc----attggagcaagtttgaggtaattttctgcatagttcaaagctg |
318 |
Q |
| |
|
| ||| ||||| ||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
19180335 |
tacgcacgtgttctttctgcataattcagagttggttcaaggtgattttatgcttaatttggagcaagtttgaggtaattttctgcaaagttcagagctg |
19180434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 232 - 324
Target Start/End: Original strand, 1380302 - 1380398
Alignment:
| Q |
232 |
tgtttttctgcataattcatagttggttcaaggtgattttctgcat----tggagcaagtttgaggtaattttctgcatagttcaaagctggttttt |
324 |
Q |
| |
|
||||||||||||||||||| || ||||| ||| | ||||||| ||| |||||| ||| |||||||| |||||||||||||| ||||| ||||| |
|
|
| T |
1380302 |
tgtttttctgcataattcagagatggtttaagataattttcttcataatttggagcgtgttcgaggtaatattctgcatagttcagagctgattttt |
1380398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 323
Target Start/End: Original strand, 11475212 - 11475252
Alignment:
| Q |
283 |
caagtttgaggtaattttctgcatagttcaaagctggtttt |
323 |
Q |
| |
|
|||||||||||||||| ||| | |||||||||||||||||| |
|
|
| T |
11475212 |
caagtttgaggtaattctctacgtagttcaaagctggtttt |
11475252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 323
Target Start/End: Original strand, 11503252 - 11503292
Alignment:
| Q |
283 |
caagtttgaggtaattttctgcatagttcaaagctggtttt |
323 |
Q |
| |
|
|||||||||||||||| ||| | |||||||||||||||||| |
|
|
| T |
11503252 |
caagtttgaggtaattctctacgtagttcaaagctggtttt |
11503292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 331
Target Start/End: Complemental strand, 49233986 - 49233897
Alignment:
| Q |
246 |
attcatagttggttcaaggtgattttctgcat----tggagcaagtttgaggtaattttctgcatagttcaaagctggtttttggcatgt |
331 |
Q |
| |
|
||||| || ||||||||||| ||||||||||| |||||| || | ||||| |||||||||||| || | |||||||||| ||||||| |
|
|
| T |
49233986 |
attcagagctggttcaaggtaattttctgcataatttggagcgagatcgaggtgattttctgcataatttagagctggttttcggcatgt |
49233897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 331
Target Start/End: Original strand, 24455812 - 24455901
Alignment:
| Q |
246 |
attcatagttggttcaaggtgattttctgcat----tggagcaagtttgaggtaattttctgcatagttcaaagctggtttttggcatgt |
331 |
Q |
| |
|
||||| || ||||||||||| ||||||||||| |||||| || | ||||| |||||||||||| || | |||||||||| ||||||| |
|
|
| T |
24455812 |
attcagagctggttcaaggtaattttctgcataatttggagcgagatcgaggtgattttctgcataatttagagctggttttcggcatgt |
24455901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 323
Target Start/End: Complemental strand, 38251754 - 38251714
Alignment:
| Q |
283 |
caagtttgaggtaattttctgcatagttcaaagctggtttt |
323 |
Q |
| |
|
|||||||||||||||| ||| | |||||||||||||||||| |
|
|
| T |
38251754 |
caagtttgaggtaattctctacgtagttcaaagctggtttt |
38251714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 323
Target Start/End: Original strand, 43157788 - 43157828
Alignment:
| Q |
283 |
caagtttgaggtaattttctgcatagttcaaagctggtttt |
323 |
Q |
| |
|
|||||||||||||||| ||| | |||||||||||||||||| |
|
|
| T |
43157788 |
caagtttgaggtaattctctacgtagttcaaagctggtttt |
43157828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University