View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13038_low_13 (Length: 428)
Name: NF13038_low_13
Description: NF13038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13038_low_13 |
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| [»] scaffold0565 (2 HSPs) |
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Alignment Details
Target: scaffold0565 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: scaffold0565
Description:
Target: scaffold0565; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 58 - 409
Target Start/End: Complemental strand, 4648 - 4299
Alignment:
| Q |
58 |
gcttctaattaataatgtcacatatgattatctttttacttcatttggatagccaccacatccttaattactttccataatttatcactatttt-gtagg |
156 |
Q |
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| T |
4648 |
gcttctaattaataatgtcacatatgattatttttttacttcatttggatagccac---atccttaattattttccataatttatcactatttttgtagg |
4552 |
T |
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| Q |
157 |
gacaacgaattagttttagagggcaagtgcaaaattaccaaaggacagtgtcccaattggtaaattattttggagatgagaacactgctgcaaattatct |
256 |
Q |
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| T |
4551 |
gacaacgaattagttttagagggcaagtgcaaaattaccaaaggacagtgtcccaattggtaaattattttggagatgagaacactgctgcaaattatct |
4452 |
T |
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| Q |
257 |
tagcaagtgcatttatacaattggattgggtagcaatgattaccttaacaattatttcatgcctacaatctattccactagtagacaattcacacctcaa |
356 |
Q |
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| T |
4451 |
tagcaagtgcatttatacaattggattgggtagcaatgattaccttaacaattatttcatgcctacaatctattccactagtagacaattcacacctcaa |
4352 |
T |
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| Q |
357 |
caatatgctaatgtccttcttcaagcatatgctcagcaacttagggtcagact |
409 |
Q |
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| T |
4351 |
caatatgctaatgtccttcttcaagcatatgctcagcaactcagggtcagact |
4299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0565; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 39
Target Start/End: Complemental strand, 4689 - 4661
Alignment:
| Q |
11 |
cagagaagaaacaggacaacaattggtac |
39 |
Q |
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| T |
4689 |
cagagaagaaacaggacaacaattggtac |
4661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 149 - 403
Target Start/End: Original strand, 7614649 - 7614900
Alignment:
| Q |
149 |
tttgtagggacaacgaattagttttagagggcaagtgcaaaattaccaaaggacagtgtcccaattggtaaattattttggagatgagaacactgctgca |
248 |
Q |
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| T |
7614649 |
tttgtagggagatcgtattagttttagtgggcaagtacaaaactaccaaaagacagtgtcccaagtggtaaatttgcttggagatgaggatacagcttca |
7614748 |
T |
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| Q |
249 |
aattatcttagcaagtgcatttatacaattggattgggtagcaatgattaccttaacaattatttcatgcctacaatctattccactagtagacaattca |
348 |
Q |
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| T |
7614749 |
aattatcttagcaaatgcatctattccattggattgggtagcaatgattaccttaacaactatttcatgcctgc---ttatcccagtggtagacagttta |
7614845 |
T |
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| Q |
349 |
cacctcaacaatatgctaatgtccttcttcaagcatatgctcagcaacttagggt |
403 |
Q |
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| T |
7614846 |
caccacaacagtatgctgatgttcttattcaagcatatgctcaacaactcagggt |
7614900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 84; Significance: 9e-40; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 149 - 320
Target Start/End: Original strand, 8491777 - 8491948
Alignment:
| Q |
149 |
tttgtagggacaacgaattagttttagagggcaagtgcaaaattaccaaaggacagtgtcccaattggtaaattattttggagatgagaacactgctgca |
248 |
Q |
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| T |
8491777 |
tttgtagggagatcgtattagttttagtggtcaagtacaaaactaccaaaagacagtgtcccaagtgataaatttgcttggagattagaatacagcttca |
8491876 |
T |
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| Q |
249 |
aattatcttagcaagtgcatttatacaattggattgggtagcaatgattaccttaacaattatttcatgcct |
320 |
Q |
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| T |
8491877 |
aattatcttagcaaatgcatctattccattggattgggtagcaatgattaccttaacaactatttcatgcct |
8491948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 258 - 320
Target Start/End: Complemental strand, 36362296 - 36362234
Alignment:
| Q |
258 |
agcaagtgcatttatacaattggattgggtagcaatgattaccttaacaattatttcatgcct |
320 |
Q |
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|||||||| ||||| |||||||||||||||||||||||||| | ||||| |||||||||||| |
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| T |
36362296 |
agcaagtgtatttactcaattggattgggtagcaatgattacttgaacaactatttcatgcct |
36362234 |
T |
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