View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13038_low_14 (Length: 422)
Name: NF13038_low_14
Description: NF13038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13038_low_14 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Original strand, 23439261 - 23439677
Alignment:
| Q |
1 |
ttcgaaatcaacattcacttcatcgatgggagcaccaaatgggaacctaacgttaaagtttgcaacactgttgtctgtatgtttatgcaatccattgtca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
23439261 |
ttcgaaatcaacattcacttcatcgatgggagcaccaaatgggaacctaacgttaaagtttgcaacactgttgtctgtatgtttatgcaaaccattgtca |
23439360 |
T |
|
| Q |
101 |
ataactggttcagaaagagggtcttgttgaagataatggaggtccttttgagatcaaagcaaagctatttccaaatgaagttccaccaatcacagaagat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23439361 |
ataactggttcagaaagagggtcttgttcaagataatggaggtccttttgagatcaaagcaaagctatttccaaatgaagttccaccaatcacagaagat |
23439460 |
T |
|
| Q |
201 |
acatcagaaacagctggtgcactttgggacatatatcgaagagaagatactgcaaagttagaagcatatcttggaaaatattccaaagaatttaggcata |
300 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
23439461 |
acatcagaaacagctagtgcactttgggacatatttcgaagagaagatactgcaaagttagaagcatatcttagaaaatattccaaagaatttaggcata |
23439560 |
T |
|
| Q |
301 |
cttatttttctccagtaaaagaggtattatattatcacatttcatcaacgtttccgcttatannnnnnnnnnacatctttgagtctcactaacttctttt |
400 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
23439561 |
cttattgttctccagtaaaagaggtattatattatcacatttcatcaacgtttccgcttata-tttatttttacatgtttgagtctcactaacttctttt |
23439659 |
T |
|
| Q |
401 |
ttgctgatgatgtccatc |
418 |
Q |
| |
|
||||| | | |||||||| |
|
|
| T |
23439660 |
ttgcttaggttgtccatc |
23439677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 23438119 - 23438008
Alignment:
| Q |
1 |
ttcgaaatcaacattcacttcatcgatgggagcaccaaatgggaacctaacgttaaagtttgcaacactgttgtctgtatgtttatgcaatccattgtca |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
23438119 |
ttcgaaatcaacactcacttcatcgatgggagcaccaaatgggaacctaacgttaaagtttgcaacactgttgtctgtatg-ttatgcaaaccattgtca |
23438021 |
T |
|
| Q |
101 |
ataactggttcag |
113 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
23438020 |
ataattggttcag |
23438008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 299; Significance: 1e-168; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 418
Target Start/End: Complemental strand, 8673633 - 8673217
Alignment:
| Q |
1 |
ttcgaaatcaacattcacttcatcgatgggagcaccaaatgggaacctaacgttaaagtttgcaacactgttgtctgtatgtttatgcaatccattgtca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
8673633 |
ttcgaaatcaacattcacttcatcgatgggagcaccaaatgggaacctaacgttaaagtttgcgacactgttgtctgtatgtttatgcaaaccattgtca |
8673534 |
T |
|
| Q |
101 |
ataactggttcagaaagagggtcttgttgaagataatggaggtccttttgagatcaaagcaaagctatttccaaatgaagttccaccaatcacagaagat |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
8673533 |
ataactggttcaaaaagagggtcttgttcaagataatggaggtccttttaagatcaaaggaaagctatttctaaatgaagttccaccaatcacagaagat |
8673434 |
T |
|
| Q |
201 |
acatcagaaacagctggtgcactttgggacatatatcgaagagaagatactgcaaagttagaagcatatcttggaaaatattccaaagaatttaggcata |
300 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
8673433 |
acattagaaacaactggtgcactttgggacatattccgaagagaagatactgcaaagttagaagcatatcttagaaaatattccaaagaatttaggcata |
8673334 |
T |
|
| Q |
301 |
cttatttttctccagtaaaagaggtattatattatcacatttcatcaacgtttccgcttatannnnnnnnnnacatctttgagtctcactaacttctttt |
400 |
Q |
| |
|
||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
8673333 |
cttgttgttctccagtaaaagaggtattatattatcacatttcatcaatatttccgcttata-tttatttttacatgtttgagtctcactaacttctttg |
8673235 |
T |
|
| Q |
401 |
ttgctgatgatgtccatc |
418 |
Q |
| |
|
||||| | | |||||||| |
|
|
| T |
8673234 |
ttgcttaggttgtccatc |
8673217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 112 - 340
Target Start/End: Complemental strand, 8719815 - 8719587
Alignment:
| Q |
112 |
agaaagagggtcttgttgaagataatggaggtccttttgagatcaaagcaaagctatttccaaatgaagttccaccaatcacagaagatacatcagaaac |
211 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||| |||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
8719815 |
agaaagaaggtcttgttcaagataatggaggtcattttgagatcaatggaaagctatttccaaatgaagttccatcaatcacagaagatacatcagaaac |
8719716 |
T |
|
| Q |
212 |
agctggtgcactttgggacatatatcgaagagaagatactgcaaagttagaagcatatcttggaaaatattccaaagaatttaggcatacttatttttct |
311 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||| | ||||||||||||||||||||||||||| |||| |
|
|
| T |
8719715 |
agctggtgcactttgggacatattccgaagagaagatactgcaaagttagaaacatatcttagaagacattccaaagaatttaggcatacttattgttct |
8719616 |
T |
|
| Q |
312 |
ccagtaaaagaggtattatattatcacat |
340 |
Q |
| |
|
|||||||||||||||||||| |||||||| |
|
|
| T |
8719615 |
ccagtaaaagaggtattatactatcacat |
8719587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 189 - 361
Target Start/End: Complemental strand, 8591895 - 8591723
Alignment:
| Q |
189 |
atcacagaagatacatcagaaacagctggtgcactttgggacatatatcgaagagaagatactgcaaagttagaagcatatcttggaaaatattccaaag |
288 |
Q |
| |
|
|||||| |||| | ||| |||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||| |||| ||| ||||| |
|
|
| T |
8591895 |
atcacaaaagaaatatctgaaacagctggtgctctttgggacatatttaaaagagaagatactgcaaagttagaagcatatcttcaaaaacattgcaaag |
8591796 |
T |
|
| Q |
289 |
aatttaggcatacttatttttctccagtaaaagaggtattatattatcacatttcatcaacgtttccgcttat |
361 |
Q |
| |
|
||||||||||||||| ||| ||||| ||| || ||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
8591795 |
aatttaggcatacttttttctctccggtagaaaaggtattatattatcgcatttcatcaacgtttccacttat |
8591723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 8674624 - 8674736
Alignment:
| Q |
1 |
ttcgaaatcaacattcacttcatcgatgggagcaccaaatgggaacctaacgttaaagtttgcaacactgttgtctgtatgtttatgcaatccattgtca |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||| ||||||||| |
|
|
| T |
8674624 |
ttcgaaatcaacattcacttcatcaatgggagcaccaaatgggaacctaacattaaagtttgcaaca---ttatctgtatgtttatgcaaaccattgtca |
8674720 |
T |
|
| Q |
101 |
ataactggttcagaaa |
116 |
Q |
| |
|
|||||||||| ||||| |
|
|
| T |
8674721 |
ataactggtttagaaa |
8674736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 6 - 116
Target Start/End: Complemental strand, 50507880 - 50507770
Alignment:
| Q |
6 |
aatcaacattcacttcatcgatgggagcaccaaatgggaacctaacgttaaagtttgcaacactgttgtctgtatgtttatgcaatccattgtcaataac |
105 |
Q |
| |
|
|||||||||||||||| ||| | |||||| ||||||||||||||||||||||||||| |||| ||||||||||||| ||| ||| | |||||||||||| |
|
|
| T |
50507880 |
aatcaacattcacttcgtcggtaggagcatcaaatgggaacctaacgttaaagtttgtaacattgttgtctgtatgattaagcagacaattgtcaataac |
50507781 |
T |
|
| Q |
106 |
tggttcagaaa |
116 |
Q |
| |
|
||||||||||| |
|
|
| T |
50507780 |
tggttcagaaa |
50507770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 6 - 116
Target Start/End: Original strand, 10783527 - 10783637
Alignment:
| Q |
6 |
aatcaacattcacttcatcgatgggagcaccaaatgggaacctaacgttaaagtttgcaacactgttgtctgtatgtttatgcaatccattgtcaataac |
105 |
Q |
| |
|
||||||||||||||| || | ||||||||||||||||||| ||| |||||||||| |||| |||||| |||||| ||| ||| |||||||||||||| |
|
|
| T |
10783527 |
aatcaacattcactttgtcagtaggagcaccaaatgggaacccaacattaaagtttgtaacattgttgtatgtatgattaagcagaccattgtcaataac |
10783626 |
T |
|
| Q |
106 |
tggttcagaaa |
116 |
Q |
| |
|
||||||||||| |
|
|
| T |
10783627 |
tggttcagaaa |
10783637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 225 - 306
Target Start/End: Complemental strand, 55410510 - 55410429
Alignment:
| Q |
225 |
tgggacatatatcgaagagaagatactgcaaagttagaagcatatcttggaaaatattccaaagaatttaggcatacttatt |
306 |
Q |
| |
|
||||| |||| ||| ||||| || |||| |||||||| |||||||||| ||||| | || |||||||| ||||||||||||| |
|
|
| T |
55410510 |
tgggatatatttcggagagaggacactgaaaagttaggagcatatcttagaaaacactcgaaagaattcaggcatacttatt |
55410429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University