View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13038_low_15 (Length: 418)
Name: NF13038_low_15
Description: NF13038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13038_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-137; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 45 - 404
Target Start/End: Complemental strand, 35318666 - 35318298
Alignment:
| Q |
45 |
ccatttacaagacataagtcggcgaccgattagagaaaaaatcagcaatattaatttgtcagctccaaaaaataacaaaacgatgaagatgtgtttgact |
144 |
Q |
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| T |
35318666 |
ccatttacaagacataagtcggcgaccgattagagaaaaattcagcaatattaatttgtcagctccaaaaaataacaaaacgacgaagatgtgtttgact |
35318567 |
T |
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| Q |
145 |
aattaa----ctcaacactaattaagttgctttcgatgcatacagctactactagtgaataactttgtcaaactaacaactggtccaatataaaatgtta |
240 |
Q |
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| T |
35318566 |
aattaattaactcaactctaatcaagttgctttccatgcatacagctactactagtgaataactttgtcaaactaacaactggtccaatataaaatgtta |
35318467 |
T |
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| Q |
241 |
ttatagtgttaatg---attagtatataact----tatgctgaatggatataatgggagtttttgcatggcacgctatc--tctattttatgagtaagaa |
331 |
Q |
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|||||||||||||| ||||||||| |||| |||||||||||| |||||||||||||||||||||||||||||| | |||| |||| ||||||| |
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| T |
35318466 |
ttatagtgttaatgattattagtatagaacttatatatgctgaatgg--ataatgggagtttttgcatggcacgctatctttttattatatgggtaagaa |
35318369 |
T |
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| Q |
332 |
catatgctacgtcgttttaattagattatttcttaataaaataagaaatatcatcttcaagtacattattttt |
404 |
Q |
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| T |
35318368 |
c--atgctacgtcgttttaattatattatttcttaataaaataagaagtatcatcttcaagtacattattttt |
35318298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 45 - 313
Target Start/End: Complemental strand, 35293801 - 35293524
Alignment:
| Q |
45 |
ccatttacaagacataagtcggcgaccgattagagaaaaaatcagcaatattaatttgtcagctccaaaaaataacaaaacgatgaagatgtgtttgact |
144 |
Q |
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| T |
35293801 |
ccatttacaagacataagtcggcgaccgattagagaaaaattcagcaatattaatttgtcagctccaaaaaataacaaaacgacgaagatgtgtttgact |
35293702 |
T |
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| Q |
145 |
aattaa----ctcaacactaattaagttgctttcgatgcatacagctactactagtgaataactttgtcaaactaacaactggtccaatataaaatgtta |
240 |
Q |
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|||||| |||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35293701 |
aattaattaactcaactctaatcaagttgctttccatgcatacagctactactagtgaataactttgtcaaactaacaactggtccaatataaaatgtta |
35293602 |
T |
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| Q |
241 |
ttatagtgttaatg---attagtatataact----tatgctgaatggatataatgggagtttttgcatggcacgctatct |
313 |
Q |
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| T |
35293601 |
ttatagtgttaatgattattagtatagaacttatatatgctgaatgg--ataatggaagtttttgcatggcacgctatct |
35293524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 130 - 307
Target Start/End: Complemental strand, 35284093 - 35283908
Alignment:
| Q |
130 |
aagatgtgtttgactaattaactcaacactaattaagttgctttcgatgcata----cagctac-tactagtg--aataactttgtcaaactaacaactg |
222 |
Q |
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| T |
35284093 |
aagatgtgtttgactgattaactcaactctaattaagttgctttacatgcatatatacagctacgtactagtgtgaatagcta-gtcaaactaataactg |
35283995 |
T |
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| Q |
223 |
-----gtccaatataaaatgttattatagtgttaatgattagtatataacttatgctgaatggatataatgggagtttttgcatggcacg |
307 |
Q |
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| T |
35283994 |
actgggtccaaca-aaaatgttattatagtgttaatgattagtatagcagttatactgaatgg--atgattggagtttttgcatggcacg |
35283908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 113 - 181
Target Start/End: Complemental strand, 35325916 - 35325848
Alignment:
| Q |
113 |
aaaataacaaaacgatgaagatgtgtttgactaattaactcaacactaattaagttgctttcgatgcat |
181 |
Q |
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||||||||| |||||||||| |||||||||||||| ||| |||| ||||| |||||||| || |||||| |
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| T |
35325916 |
aaaataacagaacgatgaagttgtgtttgactaataaacccaactctaatcaagttgctgtctatgcat |
35325848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 149
Target Start/End: Complemental strand, 35309773 - 35309709
Alignment:
| Q |
84 |
aatcagcaatattaatttgtcagctccaaaaaataacaaaacgatgaagatgtgtttgactaatta |
149 |
Q |
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|||||||||||| ||||||||| | ||||||| || | ||||||| ||||||||||||||||||| |
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| T |
35309773 |
aatcagcaatatgaatttgtcatcaccaaaaatcaa-agaacgatgtagatgtgtttgactaatta |
35309709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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