View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13038_low_17 (Length: 364)
Name: NF13038_low_17
Description: NF13038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13038_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 14131031 - 14131359
Alignment:
| Q |
1 |
cggtatccacttctgtcacaagccttgacagcagcccatagctgcaatttactgtgaaactagccacttgatcttctgtccagataaatgagtctgcaac |
100 |
Q |
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| T |
14131031 |
cggtatccacttctgtcacaagccttgacagcagcccatagctgcaatttactgtgaaactagccacttgatcttctgtccagataaatgagtttgcaac |
14131130 |
T |
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| Q |
101 |
attatcttgcagctgcacatatgttaacatttcctctaattcagaaacttgttcctttatttgtaacataaactgatttgtcaaaacgtaatctatataa |
200 |
Q |
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| T |
14131131 |
attatcttgcagctgcacatatgttaacatttcctctaattcagaaacttgttcctttatttgtaacataaactgatttgtcaaaacgtaatctatataa |
14131230 |
T |
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| Q |
201 |
atgaggaaattgtatgaactatggttgatcacttaactataaatctttccnnnnnnncatgatttctccattaccaagttttctatgaactatactagcc |
300 |
Q |
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| T |
14131231 |
atgaggaaattgt-----------------acttaactataaatctttccaaaaaaacatgatttctccattaccaagttttctatgaactatactagcc |
14131313 |
T |
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| Q |
301 |
aacaaatttgtagataaatcatcaacaaaactgattgcgcggaagt |
346 |
Q |
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| T |
14131314 |
aacaaatttgtagataaatcatcaacaaaactgattgcgcggaagt |
14131359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 14118635 - 14118762
Alignment:
| Q |
1 |
cggtatccacttctgtcacaagccttgacagcagcccatagctgcaatttactgtgaaactagccacttgatcttctgtccagataaatgagtctgcaac |
100 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||| || |||| |||||||||||||||||||||||| |
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| T |
14118635 |
cggtatccacttctgtcacaagccttgacagcagcacatagctgcaaattactgtgaaacttgccgctcgatcggttgtccagataaatgagtctgcaac |
14118734 |
T |
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| Q |
101 |
attatcttgcagctgcacatatgttaac |
128 |
Q |
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| T |
14118735 |
attatcttgcagctgcacatgtgttaac |
14118762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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