View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13038_low_20 (Length: 313)
Name: NF13038_low_20
Description: NF13038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13038_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 11 - 294
Target Start/End: Complemental strand, 19270583 - 19270300
Alignment:
| Q |
11 |
gatgaaggtcgaagcatgtcttacgcagaaagaagagtgaaaccaaagagcacgaagaagatgaaaccnnnnnnncaagataaggaaaatttgtcatcac |
110 |
Q |
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| T |
19270583 |
gatgaaggtagaagcatgtctcacgcagaaagaagagtgaaaccaaagagcacgaagaagatgaaaccaaaaaaacaagataaggaaaatttgtcatctc |
19270484 |
T |
|
| Q |
111 |
cttggccaatattgcctattcacatagagaacaagatcaaagagttgaatggcactgatatcaaatatattatgggtaaaaaattgtttgcgtcagatct |
210 |
Q |
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| T |
19270483 |
ctccaccaatattgcctattcacatagagaacaagatcaaagagttgaatggcactgatatcaaatatatcatgggtaaaaaattgtttgcatcaaatct |
19270384 |
T |
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| Q |
211 |
caaagatgaccaaaatcgtctattaatgtcgattnnnnnnntcaaagtcgattttctcaccaacatagaaaaggacgtgtcttt |
294 |
Q |
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| T |
19270383 |
caaagatgaccaaaatcgtctattaatgtcgattaaagaagtcaaagttgattttctcaccgacatagaaaaagacgtgtcttt |
19270300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 129; Significance: 9e-67; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 11 - 285
Target Start/End: Original strand, 1587223 - 1587497
Alignment:
| Q |
11 |
gatgaaggtcgaagcatgtcttacgcagaaagaagagtgaaaccaaagagcacgaagaagatgaaaccnnnnnnncaagataaggaaaatttgtcatcac |
110 |
Q |
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| T |
1587223 |
gatgaaggtagcagcatgtcttatgtggaaagaagagttaaaccaaagaccacgaagaagatcaaaccaaaaaaacatgataaggaaaatttgtcatcac |
1587322 |
T |
|
| Q |
111 |
cttggccaatattgcctattcacatagagaacaagatcaaagagttgaatggcactgatatcaaatatattatgggtaaaaaattgtttgcgtcagatct |
210 |
Q |
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| T |
1587323 |
ctccaccaatattgcctattcacgttgagaacaagatcaaagagtttaatggcactgatatcaaaaatatcatgtgtaaaaaattgtctgcgtcagatct |
1587422 |
T |
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| Q |
211 |
caaagatgaccaaaatcgtctattaatgtcgattnnnnnnntcaaagtcgattttctcaccaacatagaaaagga |
285 |
Q |
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| T |
1587423 |
cagggatgaccaaaatcgtcttttaatgccgcttaaagaagtcaaagttgattttctcaccgacatagaaaagga |
1587497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 11 - 285
Target Start/End: Complemental strand, 1591000 - 1590726
Alignment:
| Q |
11 |
gatgaaggtcgaagcatgtcttacgcagaaagaagagtgaaaccaaagagcacgaagaagatgaaaccnnnnnnncaagataaggaaaatttgtcatcac |
110 |
Q |
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| T |
1591000 |
gatgaaggtagcagcatgttttatgcggaaagaagtgttaaaccaaagaccacgaagaagatcaaaccaaaaaaacatgataaggaaaatttgtcatcac |
1590901 |
T |
|
| Q |
111 |
cttggccaatattgcctattcacatagagaacaagatcaaagagttgaatggcactgatatcaaatatattatgggtaaaaaattgtttgcgtcagatct |
210 |
Q |
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| T |
1590900 |
ctccaccaatattgcctattcacgttgagaacaagatcaaagagtttaatggcactgatatcaaaaatatcatgtgtaaaaaattgtctgcgtcggatct |
1590801 |
T |
|
| Q |
211 |
caaagatgaccaaaatcgtctattaatgtcgattnnnnnnntcaaagtcgattttctcaccaacatagaaaagga |
285 |
Q |
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| T |
1590800 |
cagggatgaccaaaatcgtcttttaatgccgcttaaagaagtcaaagtcgattttctcaccgacatagaaaagga |
1590726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 39 - 212
Target Start/End: Original strand, 1580751 - 1580924
Alignment:
| Q |
39 |
aaagaagagtgaaaccaaagagcacgaagaagatgaaaccnnnnnnncaagataaggaaaatttgtcatcaccttggccaatattgcctattcacataga |
138 |
Q |
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||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||| |||||||||||||||| | | || |
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| T |
1580751 |
aaagaagagtgaaaccaaagagcacgaagaagatggtaccaaaaaaacaagataaggaaaaattgtcatcacctccgccaatattgcctattgatgtcga |
1580850 |
T |
|
| Q |
139 |
gaacaagatcaaagagttgaatggcactgatatcaaatatattatgggtaaaaaattgtttgcgtcagatctca |
212 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||| |||| ||| |||| ||||||||| |||||||||| |
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| T |
1580851 |
gatcaagatcaaagagttgaatggcactgatatcaaacatatcatgtgtaaggaattgtttgattcagatctca |
1580924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 39 - 212
Target Start/End: Complemental strand, 1604064 - 1603891
Alignment:
| Q |
39 |
aaagaagagtgaaaccaaagagcacgaagaagatgaaaccnnnnnnncaagataaggaaaatttgtcatcaccttggccaatattgcctattcacataga |
138 |
Q |
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||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||| |||||||||||||||| | | || |
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| T |
1604064 |
aaagaagagtgaaaccaaagagcacgaagaagatggtaccaaaaaaacaagataaggaaaaattgtcatcacctccgccaatattgcctattgatgtcga |
1603965 |
T |
|
| Q |
139 |
gaacaagatcaaagagttgaatggcactgatatcaaatatattatgggtaaaaaattgtttgcgtcagatctca |
212 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||| |||| ||| |||| ||||||||| |||||||||| |
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| T |
1603964 |
gatcaagatcaaagagttgaatggcactgatatcaaacatatcatgtgtaaggaattgtttgattcagatctca |
1603891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 86 - 238
Target Start/End: Complemental strand, 39616178 - 39616026
Alignment:
| Q |
86 |
caagataaggaaaatttgtcatcaccttggccaatattgcctattcacatagagaacaagatcaaagagttgaatggcactgatatcaaatatattatgg |
185 |
Q |
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||||||||| |||||||| | | |||| ||||||||| |||||| | | ||||||||||||| |||||||||||||||||||||| |||||| ||| |
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| T |
39616178 |
caagataagaaaaatttggctttacctccgccaatattacctattaatgtcaagaacaagatcaaggagttgaatggcactgatatcagatatatcatgt |
39616079 |
T |
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| Q |
186 |
gtaaaaaattgtttgcgtcagatctcaaagatgaccaaaatcgtctattaatg |
238 |
Q |
| |
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|| |||||||||||||||||| || | || | ||||| |||||| |||||| |
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| T |
39616078 |
caaagaaattgtttgcgtcagatatcgatgaaggccaaagtcgtcttttaatg |
39616026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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