View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13038_low_21 (Length: 309)
Name: NF13038_low_21
Description: NF13038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13038_low_21 |
 | |
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| [»] chr1 (12 HSPs) |
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| [»] chr8 (6 HSPs) |
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| [»] chr3 (13 HSPs) |
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| [»] chr2 (4 HSPs) |
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| [»] chr4 (9 HSPs) |
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| [»] chr6 (3 HSPs) |
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| [»] chr5 (7 HSPs) |
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| [»] scaffold0042 (1 HSPs) |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 12)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 11351667 - 11351975
Alignment:
| Q |
1 |
cttgcctcctattgaactcgacatgagagttctgaaaattacaatcgaacaactgtctacaagcctaaataatacaacctagttcactgctatcacctag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
11351667 |
cttgcctcctattgaactcgacatgagagttctgaaaattacaatcgaacaactgtctacaagcctgaataatacaacctagttcactgctatcacctag |
11351766 |
T |
|
| Q |
101 |
gtttgaattaaaatgttcaacaacagacttgcaatccaaaacaaaatcaacattgtcataatgaagatcagccacccattgtagtgccgtgtgaagtcca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
11351767 |
gtttgaattaaaatgttcaacaacagacttgcaatccaaaacaaaatcaacattgtcataatgaagatcagccatccattgtagtgccgtgtgaagtcca |
11351866 |
T |
|
| Q |
201 |
acagcctcgccaacatcaacatcacaaagaggagaaaaacaatttatctttgccatgacaaaatctccctgatcatcacgtatgcatatgccaataccta |
300 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||| | |||| |||||||||||||| |||||||||| ||| ||||||||||||||||||| |
|
|
| T |
11351867 |
acagcctcgccaacattaacatcacaaagaggagaaaaacaatatgtcttagccatgacaaaatcaccctgatcattacggatgcatatgccaataccta |
11351966 |
T |
|
| Q |
301 |
ccatattca |
309 |
Q |
| |
|
||||||||| |
|
|
| T |
11351967 |
ccatattca |
11351975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 6784319 - 6784011
Alignment:
| Q |
1 |
cttgcctcctattgaactcgacatgagagttctgaaaattacaatcgaacaactgtctacaagcctaaataatacaacctagttcactgctatcacctag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
6784319 |
cttgcctcctattgaactcgacatgagagttctgaaaataacaatcgaacaactgtctacaagcctgaataatacaacctagttcactgctatcacctag |
6784220 |
T |
|
| Q |
101 |
gtttgaattaaaatgttcaacaacagacttgcaatccaaaacaaaatcaacattgtcataatgaagatcagccacccattgtagtgccgtgtgaagtcca |
200 |
Q |
| |
|
|||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||||||| |
|
|
| T |
6784219 |
gtttaaattaaaacgttcaacaagagacttgcaatccaaaacaaaatcaacattgtcataacgaagattagtcacccattgtagtgccgtgtgaagtcca |
6784120 |
T |
|
| Q |
201 |
acagcctcgccaacatcaacatcacaaagaggagaaaaacaatttatctttgccatgacaaaatctccctgatcatcacgtatgcatatgccaataccta |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
6784119 |
acagcctcgccaacatcaacatcacaaagaggagagaaacaatttgtcttagccatgacaaaatcatcctgatcatcacgaatgcatatgccaataccta |
6784020 |
T |
|
| Q |
301 |
ccatattca |
309 |
Q |
| |
|
||||||||| |
|
|
| T |
6784019 |
ccatattca |
6784011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 20639631 - 20639323
Alignment:
| Q |
1 |
cttgcctcctattgaactcgacatgagagttctgaaaattacaatcgaacaactgtctacaagcctaaataatacaacctagttcactgctatcacctag |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
20639631 |
cttgcctcctattgaactcaacatgagagttctgaaaattacaatcgaacaactgcctacaagcctgaataatacaacctagttcactactatcacctag |
20639532 |
T |
|
| Q |
101 |
gtttgaattaaaatgttcaacaacagacttgcaatccaaaacaaaatcaacattgtcataatgaagatcagccacccattgtagtgccgtgtgaagtcca |
200 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
20639531 |
gtttgaattaaaatgttcaacaacaaacttggaatccaaaacaaaatcaacattgtcataatgaagatcagccacccattgtagtgccatgtgaagtcca |
20639432 |
T |
|
| Q |
201 |
acagcctcgccaacatcaacatcacaaagaggagaaaaacaatttatctttgccatgacaaaatctccctgatcatcacgtatgcatatgccaataccta |
300 |
Q |
| |
|
|| ||||||||||||||||||||||||||||| || |||| | | |||| ||||||| ||| || || |||||||||| ||||||||||||||||||| |
|
|
| T |
20639431 |
actgcctcgccaacatcaacatcacaaagaggtgaggaacagtctgtcttagccatgaaaaactcaccttgatcatcacagatgcatatgccaataccta |
20639332 |
T |
|
| Q |
301 |
ccatattca |
309 |
Q |
| |
|
||||||||| |
|
|
| T |
20639331 |
ccatattca |
20639323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 15 - 309
Target Start/End: Original strand, 32988972 - 32989266
Alignment:
| Q |
15 |
aactcgacatgagagttctgaaaattacaatcgaacaactgtctacaagcctaaataatacaacctagttcactgctatcacctaggtttgaattaaaat |
114 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||| || |||| |||||||| |
|
|
| T |
32988972 |
aactcgacatgagagttctgaaagttacaatcgaacaactgcctacaagtctgaataatacaacctagttcactgctatcacgtaagtttaaattaaaac |
32989071 |
T |
|
| Q |
115 |
gttcaacaacagacttgcaatccaaaacaaaatcaacattgtcataatgaagatcagccacccattgtagtgccgtgtgaagtccaacagcctcgccaac |
214 |
Q |
| |
|
||||||||||| ||||| ||||| |||||||||| |||| |||||||||||||| | ||||||||||||| | |||||||||||||||||||| ||||| |
|
|
| T |
32989072 |
gttcaacaacatacttggaatccgaaacaaaatccacatcgtcataatgaagattaaccacccattgtagcgttgtgtgaagtccaacagcctcaccaac |
32989171 |
T |
|
| Q |
215 |
atcaacatcacaaagaggagaaaaacaatttatctttgccatgacaaaatctccctgatcatcacgtatgcatatgccaatacctaccatattca |
309 |
Q |
| |
|
||||||||||||||||||||| ||||| | |||| ||||||||||| || |||||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
32989172 |
atcaacatcacaaagaggagagaaacagtcagtcttagccatgacaaactcaccctgatcatcacggatgcatatgtcaatacctaccatattca |
32989266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 21515244 - 21515101
Alignment:
| Q |
1 |
cttgcctcctattgaactcgacatgagagttctgaaaattacaatcgaacaactgtctacaagcctaaataatacaacctagttcactgctatcacctag |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||| ||| || |||||||||||||||||||||||||||||| |
|
|
| T |
21515244 |
cttgcctcctattgaactcgacatgag--ttctgaaaattacattcgaacaactgcctacaaacctgaaaaatacaacctagttcactgctatcacctag |
21515147 |
T |
|
| Q |
101 |
gtttgaattaaaatgttcaacaacagacttgcaatccaaaacaaaa |
146 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
21515146 |
gtttgaattaaaacgttcaacaacagacttgcaatccaaaacaaaa |
21515101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 44839927 - 44839990
Alignment:
| Q |
1 |
cttgcctcctattgaactcgacatgagagttctgaaaattacaatcgaacaactgtctacaagc |
64 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || || ||||| ||||||||||| |
|
|
| T |
44839927 |
cttgcctcctattgaactcgacatgagagttctgaaaactattgtcaaacaattgtctacaagc |
44839990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 2536552 - 2536589
Alignment:
| Q |
1 |
cttgcctcctattgaactcgacatgagagttctgaaaa |
38 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2536552 |
cttgcctcctattgaactcgacatgagagttctgaaaa |
2536589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 3601291 - 3601327
Alignment:
| Q |
1 |
cttgcctcctattgaactcgacatgagagttctgaaa |
37 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3601291 |
cttgcctcctattgaactcgacatgagagttctgaaa |
3601327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 88
Target Start/End: Original strand, 51080743 - 51080829
Alignment:
| Q |
2 |
ttgcctcctattgaactcgacatgagagttctgaaaattacaatcgaacaactgtctacaagcctaaataatacaacctagttcact |
88 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||||| || | |||||||||||||| || |||||||||||| |||||||| |
|
|
| T |
51080743 |
ttgcctcctattaaactcgacatgagagttttgaaaactatcctgaaacaactgtctacatgcagtaataatacaaccaagttcact |
51080829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 12539157 - 12539121
Alignment:
| Q |
1 |
cttgcctcctattgaactcgacatgagagttctgaaa |
37 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |
|
|
| T |
12539157 |
cttgcctcctgttgaactcgacatgagagttctgaaa |
12539121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 17321916 - 17321880
Alignment:
| Q |
1 |
cttgcctcctattgaactcgacatgagagttctgaaa |
37 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |
|
|
| T |
17321916 |
cttgcctcctgttgaactcgacatgagagttctgaaa |
17321880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 239
Target Start/End: Original strand, 39648615 - 39648665
Alignment:
| Q |
189 |
gtgtgaagtccaacagcctcgccaacatcaacatcacaaagaggagaaaaa |
239 |
Q |
| |
|
|||||||| | ||||||||| || ||||||||||||||||| ||||||||| |
|
|
| T |
39648615 |
gtgtgaaggctaacagcctctcccacatcaacatcacaaaggggagaaaaa |
39648665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 269; Significance: 1e-150; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 5 - 309
Target Start/End: Complemental strand, 18481270 - 18480966
Alignment:
| Q |
5 |
cctcctattgaactcgacatgagagttctgaaaattacaatcgaacaactgtctacaagcctaaataatacaacctagttcactgctatcacctaggttt |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18481270 |
cctcctattgaactcgacatgagagttctgaaaattacaatcgaacaactatctacaagcctgaataatacaacctagttcactgctatcacctaggttt |
18481171 |
T |
|
| Q |
105 |
gaattaaaatgttcaacaacagacttgcaatccaaaacaaaatcaacattgtcataatgaagatcagccacccattgtagtgccgtgtgaagtccaacag |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
18481170 |
gaattaaaatgttcaacaacagacttgcaatccaaaacaaaatcaacattgtcataatgaagatcagccacccattgtagtgtcgtgtgaagtccaacag |
18481071 |
T |
|
| Q |
205 |
cctcgccaacatcaacatcacaaagaggagaaaaacaatttatctttgccatgacaaaatctccctgatcatcacgtatgcatatgccaatacctaccat |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| | |||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
18481070 |
cctcgccaacatcaacatcacaaagaggagagaaacaatctgtcttagccatgacaaaatcaccctgatcatcacggatgcatatgccaatacctaccat |
18480971 |
T |
|
| Q |
305 |
attca |
309 |
Q |
| |
|
||||| |
|
|
| T |
18480970 |
attca |
18480966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 11 - 162
Target Start/End: Original strand, 32536206 - 32536357
Alignment:
| Q |
11 |
attgaactcgacatgagagttctgaaaattacaatcgaacaactgtctacaagcctaaataatacaacctagttcactgctatcacctaggtttgaatta |
110 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||| | | ||| ||| ||||||||| ||||||||||||||||||||| |||| |||||||||||| | |
|
|
| T |
32536206 |
attgaactcgacataagagttcataaaattacaagcaatcaattgtttacaagcctgaataatacaacctagttcactattatcgtctaggtttgaatga |
32536305 |
T |
|
| Q |
111 |
aaatgttcaacaacagacttgcaatccaaaacaaaatcaacattgtcataat |
162 |
Q |
| |
|
|| | || |||| | ||||| |||||||| ||||||| |||| ||||||| |
|
|
| T |
32536306 |
aagcgatctacaataaacttgtaatccaaagcaaaatcgacatgatcataat |
32536357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 26440847 - 26440784
Alignment:
| Q |
1 |
cttgcctcctattgaactcgacatgagagttctgaaaattacaatcgaacaactgtctacaagc |
64 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| || || ||||||||||||||||| |
|
|
| T |
26440847 |
cttgcctcctattgaactcgacatgagagttctaaaaactattgtcaaacaactgtctacaagc |
26440784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 7251146 - 7251110
Alignment:
| Q |
2 |
ttgcctcctattgaactcgacatgagagttctgaaaa |
38 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
7251146 |
ttgcctcctattgaactcgacataagagttctgaaaa |
7251110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 239
Target Start/End: Complemental strand, 13419838 - 13419788
Alignment:
| Q |
189 |
gtgtgaagtccaacagcctcgccaacatcaacatcacaaagaggagaaaaa |
239 |
Q |
| |
|
||||||| |||||| |||| || ||||||||||||||||||||||||||| |
|
|
| T |
13419838 |
gtgtgaaagccaacaacctctcccacatcaacatcacaaagaggagaaaaa |
13419788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 38
Target Start/End: Original strand, 11911438 - 11911471
Alignment:
| Q |
5 |
cctcctattgaactcgacatgagagttctgaaaa |
38 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |
|
|
| T |
11911438 |
cctcctattgaactcgacatgagagttttgaaaa |
11911471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 13)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 51976801 - 51976493
Alignment:
| Q |
1 |
cttgcctcctattgaactcgacatgagagttctgaaaattacaatcgaacaactgtctacaagcctaaataatacaacctagttcactgctatcacctag |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
51976801 |
cttgcctcctattgaactcggcatgagagttctgaaaattacaatcaaacaactttctacaagcctgaataatacaacctagttcactgctatcacctag |
51976702 |
T |
|
| Q |
101 |
gtttgaattaaaatgttcaacaacagacttgcaatccaaaacaaaatcaacattgtcataatgaagatcagccacccattgtagtgccgtgtgaagtcca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
51976701 |
gtttgaattaaaatgttcaacaacagacttgcaatccaaaacaaaatcaacattgtcataatgaagatcagccacccattgtagtgtcgtgtgaagtcca |
51976602 |
T |
|
| Q |
201 |
acagcctcgccaacatcaacatcacaaagaggagaaaaacaatttatctttgccatgacaaaatctccctgatcatcacgtatgcatatgccaataccta |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
51976601 |
acagcctcgccaacatcaacatcacaaagaggagaaaaacaatctgtcttagccatgacaaaatcaccctgatcatcacggatgcatatgccaataccta |
51976502 |
T |
|
| Q |
301 |
ccatattca |
309 |
Q |
| |
|
|||||||| |
|
|
| T |
51976501 |
tcatattca |
51976493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 36684946 - 36684638
Alignment:
| Q |
1 |
cttgcctcctattgaactcgacatgagagttctgaaaattacaatcgaacaactgtctacaagcctaaataatacaacctagttcactgctatcacctag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||| |
|
|
| T |
36684946 |
cttgcctcctattgaactcgacatgagagttctgaaaattacaatcgaacaactgtctacaagcctgaatgatacaacctagttcactactatcacctag |
36684847 |
T |
|
| Q |
101 |
gtttgaattaaaatgttcaacaacagacttgcaatccaaaacaaaatcaacattgtcataatgaagatcagccacccattgtagtgccgtgtgaagtcca |
200 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
36684846 |
gtttgaattaaaatgttcaacaacaaacttgcaatccaaaacaaaatcaacattgtcataatgaagatcagtcacccattgtagtgccgtgtgaagtcca |
36684747 |
T |
|
| Q |
201 |
acagcctcgccaacatcaacatcacaaagaggagaaaaacaatttatctttgccatgacaaaatctccctgatcatcacgtatgcatatgccaataccta |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||| | |||| |||||||||||||| |||||||||||||| ||||||||||||||| ||| |
|
|
| T |
36684746 |
acagcctcgccaacatcaacatcacaaagaggagagaaacaatctgtcttagccatgacaaaatcaccctgatcatcacggatgcatatgccaatatcta |
36684647 |
T |
|
| Q |
301 |
ccatattca |
309 |
Q |
| |
|
||||||||| |
|
|
| T |
36684646 |
ccatattca |
36684638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 8705753 - 8705445
Alignment:
| Q |
1 |
cttgcctcctattgaactcgacatgagagttctgaaaattacaatcgaacaactgtctacaagcctaaataatacaacctagttcactgctatcacctag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||| |||||| |||| |
|
|
| T |
8705753 |
cttgcctcctattgaactcgacatgagagttctgaaaattacaatcaaacaactgcctacaagcctgaataatacaacctagttcactactatcaactag |
8705654 |
T |
|
| Q |
101 |
gtttgaattaaaatgttcaacaacagacttgcaatccaaaacaaaatcaacattgtcataatgaagatcagccacccattgtagtgccgtgtgaagtcca |
200 |
Q |
| |
|
||||||||||||| ||||||||||| ||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
8705653 |
gtttgaattaaaacgttcaacaacatacttggaatccaaaacaaaatcaacatggtcatagtgaagatcagccacccattgtagcgccgtgtggagtcca |
8705554 |
T |
|
| Q |
201 |
acagcctcgccaacatcaacatcacaaagaggagaaaaacaatttatctttgccatgacaaaatctccctgatcatcacgtatgcatatgccaataccta |
300 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| ||||| | |||||||||| |||| | ||||||||||||| || |||||||||||||||| |
|
|
| T |
8705553 |
acagcctcgccgacatcaacatcacaaagaggagagaaacagtccgtctttgccatatcaaacttaccctgatcatcacagatacatatgccaataccta |
8705454 |
T |
|
| Q |
301 |
ccatattca |
309 |
Q |
| |
|
||||||||| |
|
|
| T |
8705453 |
ccatattca |
8705445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 9057640 - 9057332
Alignment:
| Q |
1 |
cttgcctcctattgaactcgacatgagagttctgaaaattacaatcgaacaactgtctacaagcctaaataatacaacctagttcactgctatcacctag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||| |||||| |||| |
|
|
| T |
9057640 |
cttgcctcctattgaactcgacatgagagttctgaaaattacaatcaaacaactgcctacaagcctgaataatacaacctagttcactactatcaactag |
9057541 |
T |
|
| Q |
101 |
gtttgaattaaaatgttcaacaacagacttgcaatccaaaacaaaatcaacattgtcataatgaagatcagccacccattgtagtgccgtgtgaagtcca |
200 |
Q |
| |
|
||||||||||||| ||||||||||| ||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
9057540 |
gtttgaattaaaacgttcaacaacatacttggaatccaaaacaaaatcaacatggtcatagtgaagatcagccacccattgtagcgccgtgtggagtcca |
9057441 |
T |
|
| Q |
201 |
acagcctcgccaacatcaacatcacaaagaggagaaaaacaatttatctttgccatgacaaaatctccctgatcatcacgtatgcatatgccaataccta |
300 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| ||||| | |||||||||| |||| | ||||||||||||| || |||||||||||||||| |
|
|
| T |
9057440 |
acagcctcgccgacatcaacatcacaaagaggagagaaacagtccgtctttgccatatcaaacttaccctgatcatcacagatacatatgccaataccta |
9057341 |
T |
|
| Q |
301 |
ccatattca |
309 |
Q |
| |
|
||||||||| |
|
|
| T |
9057340 |
ccatattca |
9057332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 4978484 - 4978706
Alignment:
| Q |
1 |
cttgcctcctattgaactcgacatgagagttctgaaaattacaatcgaacaactgtctacaagcctaaataatacaacctagttcactgctatcacctag |
100 |
Q |
| |
|
|||| ||| |||| ||||||||||||||||||||||||||| || ||||||| || ||||||||| ||||||||||||||||| ||| |||||||||| |
|
|
| T |
4978484 |
cttgtctcatattaaactcgacatgagagttctgaaaattataaccgaacaagtgcctacaagccagaataatacaacctagtttactattatcacctag |
4978583 |
T |
|
| Q |
101 |
gtttgaattaaaatgttc-aacaacagacttgcaatccaaaacaaaatcaacattgtcataatgaagatcagccacccattgtagtgccgtgtgaagtcc |
199 |
Q |
| |
|
||||||||||||| |||| ||||||| | ||| ||||||||||||||| |||||||||| |||||||||||| || | ||||||| | || ||||||| |
|
|
| T |
4978584 |
gtttgaattaaaacgttcaaacaacatatttggaatccaaaacaaaattaacattgtcagaatgaagatcagacatctattgtagctctgtatgaagtct |
4978683 |
T |
|
| Q |
200 |
aacagcctcgccaacatcaacat |
222 |
Q |
| |
|
|||| |||||||||||||||||| |
|
|
| T |
4978684 |
aacaacctcgccaacatcaacat |
4978706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 3 - 152
Target Start/End: Complemental strand, 45736505 - 45736356
Alignment:
| Q |
3 |
tgcctcctattgaactcgacatgagagttctgaaaattacaatcgaacaactgtctacaagcctaaataatacaacctagttcactgctatcacctaggt |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||||||||||||| ||||||||||||| |||| | |
|
|
| T |
45736505 |
tgcctcctattgaactcgacatgagagttctgaaaattacaatcgaacaattgcctacaaacctaaataatacaacctaattcactgctatcatctagat |
45736406 |
T |
|
| Q |
103 |
ttgaattaaaatgttcaacaacagacttgcaatccaaaacaaaatcaaca |
152 |
Q |
| |
|
|| |||||||| ||| ||||||| ||||| |||||||||||||||||||| |
|
|
| T |
45736405 |
ttaaattaaaacgttgaacaacaaacttgaaatccaaaacaaaatcaaca |
45736356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 4 - 309
Target Start/End: Original strand, 26390800 - 26391105
Alignment:
| Q |
4 |
gcctcctattgaactcgacatgagagttctgaaaattacaatcgaacaactgtctacaagcctaaataatacaacctagttcactgctatcacctaggtt |
103 |
Q |
| |
|
|||||||||||||||||||| ||||||| | |||| ||||| | ||||||||||||||||| | ||||| |||||||||||||| ||||| ||||||| |
|
|
| T |
26390800 |
gcctcctattgaactcgacacgagagttataaaaactacaagcaaacaactgtctacaagcttgtataatgcaacctagttcactactatcttctaggtt |
26390899 |
T |
|
| Q |
104 |
tgaattaaaatgttcaacaacagacttgcaatccaaaacaaaatcaacattgtcataatgaagatcagccacccattgtagtgccgtgtgaagtccaaca |
203 |
Q |
| |
|
| | |||||| | || |||| | |||| |||||||| |||| || ||||| ||||| ||||| |||| | | | | || |||| ||||| | | || |
|
|
| T |
26390900 |
tcagttaaaacgatctacaagtgccttgaaatccaaagcaaagtcgacattatcatagcgaagagcagctaacaactacagcaccgtatgaagacaacca |
26390999 |
T |
|
| Q |
204 |
gcctcgccaacatcaacatcacaaagaggagaaaaacaatttatctttgccatgacaaaatctccctgatcatcacgtatgcatatgccaatacctacca |
303 |
Q |
| |
|
|||| || |||||||||||| | |||||||| ||| ||| |||| | ||||||||| || |||||||||||||| | ||||| |||||||||| || |
|
|
| T |
26391000 |
tcctctcccacatcaacatcaaagagaggagagaaaatgtttgtcttggtcatgacaaactcaccctgatcatcacgaagacatataccaatacctagca |
26391099 |
T |
|
| Q |
304 |
tattca |
309 |
Q |
| |
|
|||||| |
|
|
| T |
26391100 |
tattca |
26391105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 49758988 - 49759276
Alignment:
| Q |
1 |
cttgcctcctattgaactcgacatgagagttctgaaaattacaatcgaacaactgtctacaagcctaaataatacaacctagttcactgctatcacctag |
100 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||||||||||| | | |||| | ||||||| || |||||| |||||||||||||| ||||| |||| |
|
|
| T |
49758988 |
cttgcctcctattgaacccgacataagagttctgaaaattacaagcaagcaacagcctacaagtctgaataatgcaacctagttcactactatcctctag |
49759087 |
T |
|
| Q |
101 |
gtttgaattaaaatgttcaacaacagacttgcaatccaaaacaaaatcaacattgtcataatgaagatcagccacccattgtagtgccgtgtgaagtcca |
200 |
Q |
| |
|
||||||||||||| | | |||| ||||| | |||||||||||||| |||| ||| | | |||| |||| ||| ||||||| ||| |
|
|
| T |
49759088 |
gtttgaattaaaacgatatacaa---acttgga-tccaaaacaaaatcgacatgatcaaagtcaagagtagcc------------gccatgtgaaggcca |
49759171 |
T |
|
| Q |
201 |
acagcctcgccaacatcaacatcacaaagaggagaaaaacaatttatctttgccatgacaaaatctccctgatcatcacgtatgcatatgccaataccta |
300 |
Q |
| |
|
||| |||| | ||||||||||||| | |||| |||||||| ||||| ||||||||||| | |||||||||||||| || |||||||||||||||| |
|
|
| T |
49759172 |
acaacctcactcacatcaacatcacga----gagagaaacaattcatcttggccatgacaaacttaccctgatcatcacgaatccatatgccaataccta |
49759267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 149 - 208
Target Start/End: Complemental strand, 35529397 - 35529338
Alignment:
| Q |
149 |
aacattgtcataatgaagatcagccacccattgtagtgccgtgtgaagtccaacagcctc |
208 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
35529397 |
aacatggtcatagtgaagatcagccacccattgtggtgtcgtgtgaagtccaacagcctc |
35529338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 38998948 - 38998864
Alignment:
| Q |
1 |
cttgcctcctattgaactcgacatgagagttctgaaaattacaatcgaacaactgtctacaagcctaaataatacaacctagttc |
85 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||||| || | |||||||||||||| ||| |||||||||||| ||||| |
|
|
| T |
38998948 |
cttgcctcctattaaactcgacatgagagttttgaaaactatcctgaaacaactgtctacaggccgtaataatacaaccaagttc |
38998864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 37796646 - 37796562
Alignment:
| Q |
1 |
cttgcctcctattgaactcgacatgagagttctgaaaattacaatcgaacaactgtctacaagcctaaataatacaacctagttc |
85 |
Q |
| |
|
||||||||||||| ||||||||||||| ||| |||||| || | |||||||||||||| ||| |||||||||||| ||||| |
|
|
| T |
37796646 |
cttgcctcctattaaactcgacatgagtgttttgaaaactatcctgaaacaactgtctacaggccgtaataatacaaccaagttc |
37796562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 20916450 - 20916413
Alignment:
| Q |
1 |
cttgcctcctattgaactcgacatgagagttctgaaaa |
38 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
20916450 |
cttgcctcctattgaactcaacataagagttctgaaaa |
20916413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 20925412 - 20925375
Alignment:
| Q |
1 |
cttgcctcctattgaactcgacatgagagttctgaaaa |
38 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
20925412 |
cttgcctcctattgaactcaacataagagttctgaaaa |
20925375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 253; Significance: 1e-141; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 24543254 - 24542946
Alignment:
| Q |
1 |
cttgcctcctattgaactcgacatgagagttctgaaaattacaatcgaacaactgtctacaagcctaaataatacaacctagttcactgctatcacctag |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
24543254 |
cttgcatcctattgaactcgacatgagagttctgaaaattacaatcgaacaactatctacaagcctgaataatacaacctagttcactgctatcacctag |
24543155 |
T |
|
| Q |
101 |
gtttgaattaaaatgttcaacaacagacttgcaatccaaaacaaaatcaacattgtcataatgaagatcagccacccattgtagtgccgtgtgaagtcca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
24543154 |
gtttgaattaaaatgttcaacaacagacttgcaatccaaaacaaaatcaacattgtcataatgaagatcagccatccattgtagtgtcgtgtgaagtcca |
24543055 |
T |
|
| Q |
201 |
acagcctcgccaacatcaacatcacaaagaggagaaaaacaatttatctttgccatgacaaaatctccctgatcatcacgtatgcatatgccaataccta |
300 |
Q |
| |
|
||| ||||||| ||||||||||||||||||||||| ||| ||| | |||| |||||||||||||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
24543054 |
acaacctcgccgacatcaacatcacaaagaggagagaaagaatctgtcttagccatgacaaaatcaccctgatcatcacggatgcatatgccaataccta |
24542955 |
T |
|
| Q |
301 |
ccatattca |
309 |
Q |
| |
|
||||||||| |
|
|
| T |
24542954 |
ccatattca |
24542946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 29894391 - 29894633
Alignment:
| Q |
1 |
cttgcctcctattgaactcgacatgagagttctgaaaattacaatcgaacaactgtctacaagcctaaataatacaacctagttcactgctatcacctag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
29894391 |
cttgcctcctattgaactcgacatgagagttctgaaaattacaatcgaacaactgtctacaagcctgaataatacaatctagttcactgctatcacctag |
29894490 |
T |
|
| Q |
101 |
gtttgaattaaaatgttcaacaacagacttgcaatccaaaacaaaatcaacattgtcataatgaagatcagccacccattgtagtgccgtgtgaagtcca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
29894491 |
gtttgaattaaaatgttcaacaacagacttgcaatccaaaacaaaatcaacattgtcataatgaagatcagccatccattgtagtgtcgtgtgaagtcca |
29894590 |
T |
|
| Q |
201 |
acagcctcgccaacatcaacatcacaaagaggagaaaaacaat |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29894591 |
acagcctcgccaacatcaacatcacaaagaggagaaaaacaat |
29894633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 36365081 - 36364773
Alignment:
| Q |
1 |
cttgcctcctattgaactcgacatgagagttctgaaaattacaatcgaacaactgtctacaagcctaaataatacaacctagttcactgctatcacctag |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
36365081 |
cttgcctcctattgaactcgacatgggagttctgaaaatgacaatcgaacaactgcctacaagtatgaataatacaacctagttcactgctatcacctag |
36364982 |
T |
|
| Q |
101 |
gtttgaattaaaatgttcaacaacagacttgcaatccaaaacaaaatcaacattgtcataatgaagatcagccacccattgtagtgccgtgtgaagtcca |
200 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
36364981 |
gtttgaattaaaacgttcaacaacagacttggaatccaaaacaaaatcaacattgtcataatgaagatcagccacccattgtagtgtcatgtgaagtcca |
36364882 |
T |
|
| Q |
201 |
acagcctcgccaacatcaacatcacaaagaggagaaaaacaatttatctttgccatgacaaaatctccctgatcatcacgtatgcatatgccaataccta |
300 |
Q |
| |
|
|||||||||| ||| |||||| ||||||||||||| ||||| | | |||| ||||||| ||| || |||||||||||| | ||||||||||||||||||| |
|
|
| T |
36364881 |
acagcctcgctaacttcaacaacacaaagaggagagaaacagtctgtcttagccatgaaaaactcaccctgatcatcatggatgcatatgccaataccta |
36364782 |
T |
|
| Q |
301 |
ccatattca |
309 |
Q |
| |
|
||||||||| |
|
|
| T |
36364781 |
ccatattca |
36364773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 12555429 - 12555507
Alignment:
| Q |
1 |
cttgcctcctattgaactcgacatgagagttctgaaaattacaatcgaacaactgtctacaagcctaaataatacaacc |
79 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| | || ||||||||||||||| | | ||||||||||| |
|
|
| T |
12555429 |
cttgcctcctattgaacttgacatgagagttctgaaaactgttatgtaacaactgtctacaatcaaatataatacaacc |
12555507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 43989328 - 43989635
Alignment:
| Q |
1 |
cttgcctcctattgaactcgacatgagagttctgaaaattacaatcgaacaactgtctacaagcctaaataatacaacctagttcactgctatcacctag |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||||| |||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
43989328 |
cttgcctcctattgaactcgacatgagcgttctaaaaat-acaatcgaacaattgtctgcaagcctgaataatacaacctagttcactgctatcacctag |
43989426 |
T |
|
| Q |
101 |
gtttgaattaaaatgttcaacaacagacttgcaatccaaaacaaaatcaacattgtcataatgaagatcagccacccattgtagtgccgtgtgaagtcca |
200 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
43989427 |
gtttgaattaaaacgttcaacaacaaacttgcaatccaaaacaaaatcaacattgtcataatgaagatcagccacccattgtagtgtcgtgtgaagtcca |
43989526 |
T |
|
| Q |
201 |
acagcctcgccaacatcaacatcacaaagaggagaaaaacaatttatctttgccatgacaaaatctccctgatcatcacgtatgcatatgccaataccta |
300 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||| ||||||| | |||| |||||||||||||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
43989527 |
gcagcctcgccaacatcgacatcacaatgaggagagaaacaatctgtcttagccatgacaaaatcaccctgatcatcacggatgcatatgccaataccta |
43989626 |
T |
|
| Q |
301 |
ccatattca |
309 |
Q |
| |
|
||||||||| |
|
|
| T |
43989627 |
ccatattca |
43989635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 19315960 - 19316201
Alignment:
| Q |
1 |
cttgcctcctattgaactcgacatgagagttctgaaaattacaatcgaacaactgtctacaagcctaaataatacaacctagttcactgctatcacctag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | | | ||||||| ||||||||| | ||||| |||||||| ||||| |||||| ||| |
|
|
| T |
19315960 |
cttgcctcctattgaactcgacatgagagttctgaaaactgttaacaaacaactatctacaagcatgtataatgcaacctagctcactactatcatctac |
19316059 |
T |
|
| Q |
101 |
gtttgaattaaaatgttcaacaacagacttgcaatccaaaacaaaatcaacattgtcataatgaagatcagccacccattgtagtgccgtgtgaagtcca |
200 |
Q |
| |
|
||||| ||||| || || ||||| |||||| | || | ||||||||||||| ||||| | |||||| |||| ||| | || | || ||||| ||| |
|
|
| T |
19316060 |
atttgacttaaagtgatctacaac-ttcttgcagtgcagagcaaaatcaacattatcatactaaagatccgccaaccacttcagcgttgtatgaaggcca |
19316158 |
T |
|
| Q |
201 |
acagcctcgccaacatcaacatcacaaagaggagaaaaacaat |
243 |
Q |
| |
|
||| |||| || ||||||||||||||||||||||| ||||||| |
|
|
| T |
19316159 |
acaacctctcctacatcaacatcacaaagaggagagaaacaat |
19316201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 1394166 - 1394129
Alignment:
| Q |
1 |
cttgcctcctattgaactcgacatgagagttctgaaaa |
38 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1394166 |
cttgcctcctattgaactcgacatgagagttctgaaaa |
1394129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 9633099 - 9633063
Alignment:
| Q |
1 |
cttgcctcctattgaactcgacatgagagttctgaaa |
37 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9633099 |
cttgcctcctattgaactcgacatgagagttctgaaa |
9633063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 1479301 - 1479337
Alignment:
| Q |
1 |
cttgcctcctattgaactcgacatgagagttctgaaa |
37 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
1479301 |
cttgcctcctattgaactcgatatgagagttctgaaa |
1479337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 5124650 - 5124690
Alignment:
| Q |
1 |
cttgcctcctattgaactcgacatgagagttctgaaaatta |
41 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
5124650 |
cttgcctccgattgaactcgacattagagttctgaaaatta |
5124690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 35096949 - 35096913
Alignment:
| Q |
1 |
cttgcctcctattgaactcgacatgagagttctgaaa |
37 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
35096949 |
cttgccttctattgaactcgacatgagagttctgaaa |
35096913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 2 - 37
Target Start/End: Original strand, 17283592 - 17283627
Alignment:
| Q |
2 |
ttgcctcctattgaactcgacatgagagttctgaaa |
37 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| |
|
|
| T |
17283592 |
ttgcctcctattgaactcgacataagagttctgaaa |
17283627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 37857040 - 37857076
Alignment:
| Q |
1 |
cttgcctcctattgaactcgacatgagagttctgaaa |
37 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
37857040 |
cttgcctcctgttgaactcaacatgagagttctgaaa |
37857076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 942734 - 942426
Alignment:
| Q |
1 |
cttgcctcctattgaactcgacatgagagttctgaaaattacaatcgaacaactgtctacaagcctaaataatacaacctagttcactgctatcacctag |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
942734 |
cttgcctcctattgaactcgacattagagttctgaaaattacaatcgaacaactgcctacaagcctgaataatacaacctagttcactactatcacctag |
942635 |
T |
|
| Q |
101 |
gtttgaattaaaatgttcaacaacagacttgcaatccaaaacaaaatcaacattgtcataatgaagatcagccacccattgtagtgccgtgtgaagtcca |
200 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
942634 |
gtttgacttaaaatgttcaacaacagacttggaatccaaaacaaaatcaacattgtcataatgaagatcagccacccattgtagtgccgtgtgaagtcca |
942535 |
T |
|
| Q |
201 |
acagcctcgccaacatcaacatcacaaagaggagaaaaacaatttatctttgccatgacaaaatctccctgatcatcacgtatgcatatgccaataccta |
300 |
Q |
| |
|
|| |||||||||||||||| || |||||||||| | ||||||| | |||| ||||||||||| || |||| ||||||||| ||||||||| | ||||||| |
|
|
| T |
942534 |
actgcctcgccaacatcaatatgacaaagaggatagaaacaatatgtcttagccatgacaaactcacccttatcatcacggatgcatatggcgataccta |
942435 |
T |
|
| Q |
301 |
ccatattca |
309 |
Q |
| |
|
||||||||| |
|
|
| T |
942434 |
ccatattca |
942426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 4513113 - 4513076
Alignment:
| Q |
1 |
cttgcctcctattgaactcgacatgagagttctgaaaa |
38 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4513113 |
cttgcctcctattgaactcgacatgagagttctgaaaa |
4513076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 19047128 - 19047092
Alignment:
| Q |
1 |
cttgcctcctattgaactcgacatgagagttctgaaa |
37 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
19047128 |
cttgcctcctattaaactcgacatgagagttttgaaa |
19047092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 23820564 - 23820258
Alignment:
| Q |
1 |
cttgcctcctattgaactcgacatgagagttctgaaaattacaatcgaacaactgtctacaagcctaaataatacaacctagttcactgctatcacctag |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||| ||| ||| ||||||||||||||||| ||||||||||| |
|
|
| T |
23820564 |
cttgcctcctattgaactcgatatgagagttctgaaaattacaatcaaacaactgcctacaaacctgaatgatacaacctagttcactactatcacctag |
23820465 |
T |
|
| Q |
101 |
gtttgaattaaaatgttcaacaacagacttgcaatccaaaacaaaatcaacattgtcataatgaagatcagccacccattgtagtgccgtgtgaagtcca |
200 |
Q |
| |
|
|||||||||||| ||| |||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
23820464 |
gtttgaattaaagtgtacaacaacagacttggaatccaaaacaaaattaacatggtcataatgaagatcagccacccattgtaacgccatgtgaagtcca |
23820365 |
T |
|
| Q |
201 |
acagcctcgccaacatcaacatcacaaagaggagaaaaacaatttatctttgccatgacaaaatctccctgatcatcacgtatgcatatgccaataccta |
300 |
Q |
| |
|
||| ||||||| ||||||||||||||||||||||| ||||| | |||||| ||||||||||| || || ||| |||||| || |||||||||||||||| |
|
|
| T |
23820364 |
acaacctcgccgacatcaacatcacaaagaggagagaaacagtctatcttagccatgacaaactcaccatgaacatcacaaatacatatgccaataccta |
23820265 |
T |
|
| Q |
301 |
ccatatt |
307 |
Q |
| |
|
||||||| |
|
|
| T |
23820264 |
ccatatt |
23820258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 39 - 309
Target Start/End: Original strand, 24808859 - 24809133
Alignment:
| Q |
39 |
ttacaatcgaacaactgtctacaagcctaaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagacttgcaatcca |
138 |
Q |
| |
|
|||||| | |||||||| |||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||| | ||||||||||||||| |||| | |
|
|
| T |
24808859 |
ttacaaccaaacaactgcctacaagcctgaataatacaacctagttcactactatcaactaggtttgaattaaaacgatcaacaacagacttggaatcta |
24808958 |
T |
|
| Q |
139 |
aaacaaaatcaacattgtcataatgaagatcagccacccattgtag-tgccgtgtgaagtccaacagcctcgccaacatcaacatcacaaagaggagaaa |
237 |
Q |
| |
|
||||||||||||||| |||||| ||||||| | |||||||||||| ||||||||| | |||||||||||| | | |||||||||||||||||||| | |
|
|
| T |
24808959 |
aaacaaaatcaacatggtcatagtgaagatttgacacccattgtagctgccgtgtggaatccaacagcctctctgatgtcaacatcacaaagaggagaga |
24809058 |
T |
|
| Q |
238 |
aacaatttatctttgccatgacaaaatctc---cctgatcatcacgtatgcatatgccaatacctaccatattca |
309 |
Q |
| |
|
| || | |||| ||||| ||||| || | ||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
24809059 |
agcagtccgtcttggccataacaaactcaccggcctgatcatcacggatacatatgccaatacctaccatattca |
24809133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 21118436 - 21118373
Alignment:
| Q |
1 |
cttgcctcctattgaactcgacatgagagttctgaaaattacaatcgaacaactgtctacaagc |
64 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||| |
|
|
| T |
21118436 |
cttgcctcctattgaactcgacatgagagttctgaaaactattgtcaaacaactgtctacaagc |
21118373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 2 - 37
Target Start/End: Complemental strand, 12980770 - 12980735
Alignment:
| Q |
2 |
ttgcctcctattgaactcgacatgagagttctgaaa |
37 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| |
|
|
| T |
12980770 |
ttgcctcctgttgaactcgacatgagagttctgaaa |
12980735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 31957063 - 31957100
Alignment:
| Q |
1 |
cttgcctcctattgaactcgacatgagagttctgaaaa |
38 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
31957063 |
cttgcctcctattgaattcgacatgatagttctgaaaa |
31957100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 34
Target Start/End: Original strand, 40901876 - 40901908
Alignment:
| Q |
2 |
ttgcctcctattgaactcgacatgagagttctg |
34 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |
|
|
| T |
40901876 |
ttgcctcctattcaactcgacatgagagttctg |
40901908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 154; Significance: 1e-81; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 36779472 - 36779778
Alignment:
| Q |
1 |
cttgcctcctattgaactcgacatgagagttctgaaaattacaatcgaacaactgtctacaagcctaaataatacaacctagttcactgctatcacctag |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| |||||| | |||||||| |||||||||| ||||||||||||||||||||| || ||| ||| |
|
|
| T |
36779472 |
cttgcctcctattgtactcgacatgagagttctgaa--ttacaaccaaacaactgcctacaagccttaataatacaacctagttcactactctcaattag |
36779569 |
T |
|
| Q |
101 |
gtttgaattaaaatgttcaacaacagacttgcaatccaaaacaaaatcaacattgtcataatgaagatcagccacccattgtagtgccgtgtgaagtcca |
200 |
Q |
| |
|
||||||||||||| ||||||||| ||||||| ||||||||| ||||||||||| || ||| ||||||||| ||| ||||||||| | ||||||||||||| |
|
|
| T |
36779570 |
gtttgaattaaaacgttcaacaatagacttggaatccaaaataaaatcaacatggttatagtgaagatcaaccatccattgtagcgtcgtgtgaagtcca |
36779669 |
T |
|
| Q |
201 |
acagcctcgccaacatcaacatcacaaagaggagaaaaacaatttatctttgccatgacaaaatctccctgatcatcacgtatgcatatgccaataccta |
300 |
Q |
| |
|
||| ||| ||||||||| |||||||||||||||| ||||| || ||| ||||||||||| || |||||||||| ||| || |||||| ||||||||| |
|
|
| T |
36779670 |
tcagtctcaccaacatcatcatcacaaagaggagagaaacagttcgccttagccatgacaaactcaccctgatcataacggatacatatgtcaataccta |
36779769 |
T |
|
| Q |
301 |
ccatattca |
309 |
Q |
| |
|
||||||||| |
|
|
| T |
36779770 |
ccatattca |
36779778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 41197426 - 41197552
Alignment:
| Q |
1 |
cttgcctcctattgaactcgacatgagagttctgaaaattacaatcgaacaactgtctacaagcctaaataatacaacctagttcactgctatcacctag |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41197426 |
cttgcctcctattgaactcgacataagagttctgaaaattacaatcgaacaactgtctataagcctaaataatacaacctagttcactgctatcacctag |
41197525 |
T |
|
| Q |
101 |
gtttgaattaaaatgttcaacaacaga |
127 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
41197526 |
gtttgaattaaaatgttcaacaacaga |
41197552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 30376497 - 30376557
Alignment:
| Q |
1 |
cttgcctcctattgaactcgacatgagagttctgaaaattacaatcgaacaactgtctaca |
61 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||||||| ||||||||||||| ||||| |
|
|
| T |
30376497 |
cttgcctcctattgaactcgacataagagttttgaaaattataatcgaacaactgcctaca |
30376557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 156 - 235
Target Start/End: Complemental strand, 34905458 - 34905379
Alignment:
| Q |
156 |
tcataatgaagatcagccacccattgtagtgccgtgtgaagtccaacagcctcgccaacatcaacatcacaaagaggaga |
235 |
Q |
| |
|
||||| ||||||||||||| ||| | |||| ||| ||||| |||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
34905458 |
tcatagtgaagatcagccaaccacttcagtgtcgtatgaagaccaacaacctctccaacatcaacatcacaaagaggaga |
34905379 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 250
Target Start/End: Original strand, 24535549 - 24535611
Alignment:
| Q |
188 |
cgtgtgaagtccaacagcctcgccaacatcaacatcacaaagaggagaaaaacaatttatctt |
250 |
Q |
| |
|
||||||||| |||||| |||| || ||||||||||||||||| ||||||||||| | |||||| |
|
|
| T |
24535549 |
cgtgtgaaggccaacaacctctcccacatcaacatcacaaaggggagaaaaacagtctatctt |
24535611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 88
Target Start/End: Complemental strand, 34905611 - 34905529
Alignment:
| Q |
6 |
ctcctattgaactcgacatgagagttctgaaaattacaatcgaacaactgtctacaagcctaaataatacaacctagttcact |
88 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||| || | | ||||||||||||||||| | |||| ||||||||| ||||| |
|
|
| T |
34905611 |
ctcctattgaactcaacacaagagttctgaaaactattaacaaacaactgtctacaagcatgtataacacaacctagctcact |
34905529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 34562 - 34525
Alignment:
| Q |
1 |
cttgcctcctattgaactcgacatgagagttctgaaaa |
38 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
34562 |
cttgcttcctattaaactcgacatgagagttctgaaaa |
34525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 239
Target Start/End: Complemental strand, 89164 - 89112
Alignment:
| Q |
187 |
ccgtgtgaagtccaacagcctcgccaacatcaacatcacaaagaggagaaaaa |
239 |
Q |
| |
|
|||||||||| |||||| |||| || |||||| |||||||||||| ||||||| |
|
|
| T |
89164 |
ccgtgtgaaggccaacatcctctcccacatcaccatcacaaagagaagaaaaa |
89112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 48142 - 48110
Alignment:
| Q |
2 |
ttgcctcctattgaactcgacatgagagttctg |
34 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |
|
|
| T |
48142 |
ttgcctcctattcaactcgacatgagagttctg |
48110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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