View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13038_low_24 (Length: 275)
Name: NF13038_low_24
Description: NF13038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13038_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 11 - 245
Target Start/End: Complemental strand, 23439284 - 23439045
Alignment:
| Q |
11 |
gatgaagtgaatgttgatttcgaacaacggcccccaaataccgtttcctagggtcaaaatggtgacttagttaggaagccactacttagaaacatggaag |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||| |
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| T |
23439284 |
gatgaagtgaatgttgatttcgaacaacggcccccaaataccgtttcctggggtcaaaatggtgacttagttaggaagccactactcagaaacagggaag |
23439185 |
T |
|
| Q |
111 |
ttaccagtttttcaactgacttcaatactttcaaaagttctgcagaaggt-----taatgatgtggaggatttatgctctcagaataagagaaggaaaat |
205 |
Q |
| |
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|| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
23439184 |
tttccaatttttcaactgacttcaatactttcaaaagttctgcagaaggtttcactaatgatgtggaggatttatgctctcagaataagagaaagaaaat |
23439085 |
T |
|
| Q |
206 |
tgaaaagctagttgattctatgtgacaaaggcctgcaagt |
245 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||| |
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| T |
23439084 |
tgaaaagctagttgattctatgggacaaaggcctgcaagt |
23439045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 11 - 257
Target Start/End: Original strand, 23438096 - 23438347
Alignment:
| Q |
11 |
gatgaagtgaatgttgatttcgaacaacggcccccaaataccgtttcctagggtcaaaatggtgacttagttaggaagccactacttagaaacatggaag |
110 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||| ||||| |
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| T |
23438096 |
gatgaagtgagtgttgatttcgaacaacggcccccaaataccgtttcctggggtcaaaatggtgacttagttaggcagccactactcagaaacagggaag |
23438195 |
T |
|
| Q |
111 |
ttaccagtttttcaactgacttcaatactttcaaaagttctgcagaaggt-----taatgatgtggaggatttatgctctcagaataagagaaggaaaat |
205 |
Q |
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|||| | ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
23438196 |
ttacggggttttcaactgacttcaataatttcaaaagttctgcagaaggtttcactaatgatgtggaggatttatgctctcagaataagagaaggaaatt |
23438295 |
T |
|
| Q |
206 |
tgaaaagctagttgattctatgtgacaaaggcctgcaagtggagcctcaagt |
257 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||| |||||||| |
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|
| T |
23438296 |
tgaaaagctagttgattctatgggacaaaggcctgcaagtggaacctcaagt |
23438347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 163; Significance: 4e-87; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 11 - 257
Target Start/End: Complemental strand, 8674647 - 8674398
Alignment:
| Q |
11 |
gatgaagtgaatgttgatttcgaacaacggc-ccccaaataccgtttcctagggtcaaaatggtgacttagttaggaagccactacttagaaacatggaa |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||| | ||||||| |||| |
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|
| T |
8674647 |
gatgaagtgaatgttgatttcgaacaacggctccccaaataccgtttcctggggtcaaaatggtgacttagttaggcagccacca---agaaacagggaa |
8674551 |
T |
|
| Q |
110 |
gttaccagtttttcaactgacttcaatactttcaaaagttctgcagaaggtt-----aatgatgtggaggatttatgctctcagaataagagaaggaaaa |
204 |
Q |
| |
|
|||| | ||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||| |
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| T |
8674550 |
gttatcggtttttcaactgacttcaataatttcaaaagttctgcagaaggtttcactaataatgtggaggatttatgcttccagaataagagaaggaaaa |
8674451 |
T |
|
| Q |
205 |
ttgaaaagctagttgattctatgtgacaaaggcctgcaagtggagcctcaagt |
257 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
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|
| T |
8674450 |
ttgaaaagctagttgattctatgggacaaaggcctgcaagtggaacctcaagt |
8674398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 11 - 257
Target Start/End: Original strand, 8673610 - 8673858
Alignment:
| Q |
11 |
gatgaagtgaatgttgatttcgaacaacggcccccaaataccgtttcctagggtcaaaatggtgacttagttaggaagccactacttagaaacatggaag |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| || ||||||| ||||||| ||||| |
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| T |
8673610 |
gatgaagtgaatgttgatttcgaacaacggccccc---taccgtttcctggggtcaaaatggtgacttagttaggcaggcactactcagaaacagggaag |
8673706 |
T |
|
| Q |
111 |
ttaccagtttttcaactgacttcaatactttcaaaagttctgcagaaggt-----taatgatgtggaggatttatgctctcagaataagagaaggaaaat |
205 |
Q |
| |
|
||||| ||||||||||| |||||||| ||||||||||| || ||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
8673707 |
ttaccgatttttcaactggcttcaataatttcaaaagttatgtagaaggtttcactaatgatgtggaggatttatgctcttagaataagagaaggaaaat |
8673806 |
T |
|
| Q |
206 |
tgaaaagctagttgattctatgtgacaaaggcctgcaagtggagcctcaagt |
257 |
Q |
| |
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|||||||| ||||| ||||||| |||||| |||||||||||| |||||||| |
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|
| T |
8673807 |
tgaaaagcaagttggttctatggcacaaagacctgcaagtggaacctcaagt |
8673858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 92; Significance: 9e-45; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 15 - 257
Target Start/End: Complemental strand, 10783541 - 10783294
Alignment:
| Q |
15 |
aagtgaatgttgatttcgaacaacggcccccaaataccgtttcctagggtcaaaatggtgacttagttaggaagccactacttagaaacatggaagttac |
114 |
Q |
| |
|
||||||||||||||| ||| | | | |||||||||||||||||| |||||||||||| |||||||| ||| | |||| || || ||| | ||||||| |
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| T |
10783541 |
aagtgaatgttgattcggaaaaccaggccccaaataccgtttcctggggtcaaaatggcgacttagtaaggccgacactgctcagtaacgggaaagttac |
10783442 |
T |
|
| Q |
115 |
cagtttttcaactgacttcaatactttcaaaagttctgcagaaggtt-----aatgatgtggaggatttatgctctcagaataagagaaggaaaattgaa |
209 |
Q |
| |
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||||||||||||| ||||||||| |||||||| ||| ||||||||| ||||||| |||| ||| |||||| || |||||||||||||| ||||| |
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| T |
10783441 |
cagtttttcaactaacttcaataatttcaaaaattccacagaaggtttcactaatgatgcggagcattcatgctcccaacataagagaaggaaacttgaa |
10783342 |
T |
|
| Q |
210 |
aagctagttgattctatgtgacaaaggcctgcaagtggagcctcaagt |
257 |
Q |
| |
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||||||||||||| |||| | |||||||||||||||||| |||||||| |
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|
| T |
10783341 |
aagctagttgattttatgggccaaaggcctgcaagtggaacctcaagt |
10783294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 14 - 210
Target Start/End: Original strand, 50507865 - 50508066
Alignment:
| Q |
14 |
gaagtgaatgttgatttcgaacaacggcccccaaataccgtttcctagggtcaaaatggtgacttagttaggaagccactacttagaaacatggaagtta |
113 |
Q |
| |
|
|||||||||||||||| ||||||| | |||||||||||||||||| |||||||||||| |||||||| ||| || || | || || ||| |||| ||| |
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|
| T |
50507865 |
gaagtgaatgttgattcggaacaacaggccccaaataccgtttcctggggtcaaaatggcgacttagtaaggcagtcattgctcagtaacggggaaatta |
50507964 |
T |
|
| Q |
114 |
ccagtttttcaactgacttcaatactttcaaaagttctgcagaaggt-----taatgatgtggaggatttatgctctcagaataagagaaggaaaattga |
208 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||||| ||||||||| |||||||||||| ||| |||||||||| ||||||||||||||||||| |
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|
| T |
50507965 |
ccagtttttcaactggcttcaataatttcaaaagttccgcagaaggtttcgctaatgatgtggaacattcatgctctcagcataagagaaggaaaattga |
50508064 |
T |
|
| Q |
209 |
aa |
210 |
Q |
| |
|
|| |
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|
| T |
50508065 |
aa |
50508066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 79
Target Start/End: Original strand, 50475497 - 50475556
Alignment:
| Q |
20 |
aatgttgatttcgaacaacggcccccaaataccgtttcctagggtcaaaatggtgactta |
79 |
Q |
| |
|
||||||||||| | ||||| | ||||||||||| ||| || ||||||||||||||||||| |
|
|
| T |
50475497 |
aatgttgatttggcacaacaggccccaaataccatttgcttgggtcaaaatggtgactta |
50475556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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