View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13038_low_31 (Length: 250)
Name: NF13038_low_31
Description: NF13038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13038_low_31 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 43061320 - 43061083
Alignment:
| Q |
13 |
aatatcagcaagtttcaactatttgtttgaaagtgtttatttaaccatcttgaaaacgaaccaaaacaaactacactaaagagccaaattaaattgtagc |
112 |
Q |
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| T |
43061320 |
aatatcagcaagtttcaactatttgtttgaaagtgtttatttaaccatcttgaaaacgaaccaaaacaaactacactaaagagccaaattaaattgtagc |
43061221 |
T |
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| Q |
113 |
cacctatactgagaaaacagcaggagacaaatacaaacagtcaggtaaaactgacaataaaatatgtaaattgaaccgaaacacttgcatgccaaaggaa |
212 |
Q |
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| T |
43061220 |
cacctatactgagaaaccagcaggagacaaatacaaacagtcaggtaaaactgacaataaaatatgtaaattgaactgaaacacttgcatgccaaaggaa |
43061121 |
T |
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| Q |
213 |
agagcggaaaataaaactgatataacgcagctggaaca |
250 |
Q |
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| T |
43061120 |
agagcggaaaataaaactgatataacgcagctggaaca |
43061083 |
T |
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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 100
Target Start/End: Complemental strand, 1380662 - 1380596
Alignment:
| Q |
34 |
tttgtttgaaagtgtttatttaaccatcttgaaaacgaaccaaaacaaactacactaaagagccaaa |
100 |
Q |
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| T |
1380662 |
tttgtttgaaggcgtttatttaactatcttgaaatcaaactaaaaccaactacgctaaagagacaaa |
1380596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 101
Target Start/End: Complemental strand, 40910989 - 40910936
Alignment:
| Q |
48 |
tttatttaaccatcttgaaaacgaaccaaaacaaactacactaaagagccaaat |
101 |
Q |
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| T |
40910989 |
tttatttaactatctctaaaacaaaccaaaaccaactacactaaagagacaaat |
40910936 |
T |
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