View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13038_low_32 (Length: 248)

Name: NF13038_low_32
Description: NF13038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13038_low_32
NF13038_low_32
[»] chr3 (18 HSPs)
chr3 (9-233)||(8539204-8539428)
chr3 (11-230)||(27920218-27920436)
chr3 (46-230)||(27954303-27954483)
chr3 (10-185)||(17744443-17744615)
chr3 (10-185)||(19045763-19045935)
chr3 (11-186)||(28151670-28151841)
chr3 (10-187)||(11421007-11421180)
chr3 (10-157)||(28161925-28162069)
chr3 (10-157)||(28185968-28186112)
chr3 (10-188)||(28149985-28150160)
chr3 (11-190)||(28037455-28037631)
chr3 (10-188)||(27458794-27458965)
chr3 (11-131)||(28479813-28479930)
chr3 (11-131)||(28508996-28509113)
chr3 (94-183)||(27776545-27776634)
chr3 (85-139)||(27378544-27378598)
chr3 (191-229)||(28151582-28151620)
chr3 (189-229)||(27459011-27459051)
[»] scaffold0257 (1 HSPs)
scaffold0257 (15-188)||(19095-19265)
[»] chr2 (2 HSPs)
chr2 (12-186)||(8020852-8021021)
chr2 (85-141)||(22393515-22393571)
[»] scaffold0043 (1 HSPs)
scaffold0043 (85-141)||(52825-52881)


Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 9 - 233
Target Start/End: Original strand, 8539204 - 8539428
Alignment:
9 acatcatcatttagaaaagctgaacaaagggtgggaaagaagagagttcaacttcatgaaaatgaaaagggtgacaaggtaacttaagaaaataaaactg 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
8539204 acatcatcatttagaaaagctgaacaaagggtgggaaagaagagagttcaacttcatgaaaatgaaaagggtgacaaggtaacttaagaaaataaaactg 8539303  T
109 atccaaggattcttcaccttgattaatattagtgttactagtttcctgccaaagtttaacatcaacatcttgagtggtaacatcaccatcttcctacaaa 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
8539304 atccaaggattcttcaccttgattaatattagtgttactagtttcctgccaaagtttaacatcaacatcttgagtggtaacatcaccatcttcctacaaa 8539403  T
209 attcatataaaagaatgatattttt 233  Q
    |||||||||||||||||||||||||    
8539404 attcatataaaagaatgatattttt 8539428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 11 - 230
Target Start/End: Complemental strand, 27920436 - 27920218
Alignment:
11 atcatcatttagaaaagctgaacaaagggtgggaaagaagagagttcaacttcatgaaaatgaaaagggtgacaaggtaa---cttaagaaaataaaact 107  Q
    ||||||||||||| || |||  |||| ||||||||||||||||||| |||||||   ||||||||||| |||  ||||||   |||| ||||| || |||    
27920436 atcatcatttagagaaactgtccaaaaggtgggaaagaagagagttaaacttca---aaatgaaaagg-tgatgaggtaattgcttatgaaaacaacact 27920341  T
108 gatccaaggattcttcaccttgattaatattagtgttactagtttcctgccaaagtttaacatcaacatcttgagtggtaacatcaccatcttcctacaa 207  Q
     |||||| || | ||||||||||| |  |||||||||||||||||||||||| | |||| ||||||||| ||||||||||||||||||||||||||||||    
27920340 aatccaaagagttttcaccttgatcatcattagtgttactagtttcctgccagattttatcatcaacatattgagtggtaacatcaccatcttcctacaa 27920241  T
208 aattcatataaaagaatgatatt 230  Q
    |||||||||||||||||||||||    
27920240 aattcatataaaagaatgatatt 27920218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 46 - 230
Target Start/End: Complemental strand, 27954483 - 27954303
Alignment:
46 agaagagagttcaacttcatgaaaatgaaaagggtgacaaggtaacttaagaaaataaaactgatccaaggattcttcaccttgattaatattagtgtta 145  Q
    ||||||||||| |||||||   ||||||||||| |||  |||||||||| ||||| || ||| |||||| || | ||||||||||| |  ||||||||||    
27954483 agaagagagttaaacttca---aaatgaaaagg-tgatgaggtaacttatgaaaacaacactaatccaaagagttttcaccttgatcatcattagtgtta 27954388  T
146 ctagtttcctgccaaagtttaacatcaacatcttgagtggtaacatcaccatcttcctacaaaattcatataaaagaatgatatt 230  Q
    |||||||||||||| | |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
27954387 ctagtttcctgccagattttatcatcaacatattgagtggtaacatcaccatcttcctacaaaattcatataaaagaatgatatt 27954303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 10 - 185
Target Start/End: Original strand, 17744443 - 17744615
Alignment:
10 catcatcatttagaaaagctgaacaaagggtgggaaagaagagagttcaacttcatgaaaatgaaaagggtgacaaggtaacttaagaaaataaaactga 109  Q
    |||||||||||||| || ||| |||||||||| ||||||||||||||||||||||   |||||||||| | ||  |||||||||||||||||||||  ||    
17744443 catcatcatttagagaaactggacaaagggtgagaaagaagagagttcaacttca---aaatgaaaagagcgatgaggtaacttaagaaaataaaatcga 17744539  T
110 tccaaggattcttcaccttgattaatattagtgttactagtttcctgccaaagtttaacatcaacatcttgagtgg 185  Q
    ||||| |||| || |||||| | |  |||||| || |||||||||||||| | || ||||||||||||||||||||    
17744540 tccaaagattttttaccttggtcatcattagtctttctagtttcctgccagatttcaacatcaacatcttgagtgg 17744615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 10 - 185
Target Start/End: Original strand, 19045763 - 19045935
Alignment:
10 catcatcatttagaaaagctgaacaaagggtgggaaagaagagagttcaacttcatgaaaatgaaaagggtgacaaggtaacttaagaaaataaaactga 109  Q
    |||||||||||||| || ||| |||||||||| ||||||||||||||||||||||   |||||||||| | ||  |||||||||||||||||||||  ||    
19045763 catcatcatttagagaaactggacaaagggtgagaaagaagagagttcaacttca---aaatgaaaagagcgatgaggtaacttaagaaaataaaatcga 19045859  T
110 tccaaggattcttcaccttgattaatattagtgttactagtttcctgccaaagtttaacatcaacatcttgagtgg 185  Q
    ||||| |||| || |||||| | |  |||||| || |||||||||||||| | || ||||||||||||||||||||    
19045860 tccaaagattttttaccttggtcatcattagtctttctagtttcctgccagatttcaacatcaacatcttgagtgg 19045935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 11 - 186
Target Start/End: Complemental strand, 28151841 - 28151670
Alignment:
11 atcatcatttagaaaagctgaacaaagggtgggaaagaagagagttcaacttcatgaaaatgaaaagggtgacaaggtaacttaagaaaataaaactgat 110  Q
    ||||||||||||| || |||| |||| | ||||||| ||||||| | |||||||   |||| ||||||| ||  |||||||||||||||||||||  |||    
28151841 atcatcatttagagaaactga-caaaagatgggaaacaagagagctaaacttca---aaataaaaagggcgatgaggtaacttaagaaaataaaagcgat 28151746  T
111 ccaaggattcttcaccttgattaatattagtgttactagtttcctgccaaagtttaacatcaacatcttgagtggt 186  Q
    |||| |||||||||||||||| |  |||||||||||||||||||||||| | || |||||||||||||||||||||    
28151745 ccaaagattcttcaccttgatcatcattagtgttactagtttcctgccagatttcaacatcaacatcttgagtggt 28151670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 10 - 187
Target Start/End: Complemental strand, 11421180 - 11421007
Alignment:
10 catcatcatttagaaaagctgaacaaagggtgggaaagaagagagttcaacttcatgaaaatgaaaagggtgacaaggtaacttaagaaaataaaactga 109  Q
    ||||||||||||||  | |||| ||||  |||||||||||||||||||||||||    |||||||||||||||    |||||||||||||||||||||||    
11421180 catcatcatttagagcaactga-caaacagtgggaaagaagagagttcaacttct---aaatgaaaagggtgatgtcgtaacttaagaaaataaaactga 11421085  T
110 tccaaggattcttcaccttgattaatattagtgttactagtttcctgccaaagtttaacatcaacatcttgagtggta 187  Q
    ||||| || || |||||||||| |  |||||  |||||||||||||| || | ||||||||||||||||||| |||||    
11421084 tccaaagagtcatcaccttgatcatcattagccttactagtttcctgacagattttaacatcaacatcttgaatggta 11421007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 10 - 157
Target Start/End: Complemental strand, 28162069 - 28161925
Alignment:
10 catcatcatttagaaaagctgaacaaagggtgggaaagaagagagttcaacttcatgaaaatgaaaagggtgacaaggtaacttaagaaaataaaactga 109  Q
    |||| ||||||||| || ||||||||| |||| || |||||||| || |||||||   |||||||||||||||  || |||||||||||||||||| |||    
28162069 catcgtcatttagagaaactgaacaaaaggtgtgagagaagagatttaaacttca---aaatgaaaagggtgatgagataacttaagaaaataaaattga 28161973  T
110 tccaaggattcttcaccttgattaatattagtgttactagtttcctgc 157  Q
    ||||| || ||||||||||||| |  ||||||||||||||||||||||    
28161972 tccaaagagtcttcaccttgatcatcattagtgttactagtttcctgc 28161925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 10 - 157
Target Start/End: Complemental strand, 28186112 - 28185968
Alignment:
10 catcatcatttagaaaagctgaacaaagggtgggaaagaagagagttcaacttcatgaaaatgaaaagggtgacaaggtaacttaagaaaataaaactga 109  Q
    |||||||||||||| || ||||||||| |||| || |||||||| || |||||||   |||||||||||||||  || |||||||||||||||||| |||    
28186112 catcatcatttagagaaactgaacaaaaggtgtgagagaagagatttaaacttca---aaatgaaaagggtgatgagataacttaagaaaataaaattga 28186016  T
110 tccaaggattcttcaccttgattaatattagtgttactagtttcctgc 157  Q
    ||||| || ||||||||||||| |  || |||||||||||||||||||    
28186015 tccaaagagtcttcaccttgatcatcatcagtgttactagtttcctgc 28185968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 10 - 188
Target Start/End: Complemental strand, 28150160 - 28149985
Alignment:
10 catcatcatttagaaaagctgaacaaagggtgggaaagaagagagttcaacttcatgaaaatgaaaagggtgacaaggtaacttaagaaaataaaactga 109  Q
    |||| ||||||||| || ||||||||| |||| || |||||||| || |||||||   |||||||||||||||  || |||||||||||||||||| |||    
28150160 catcctcatttagagaaactgaacaaaaggtgtgagagaagagatttaaacttca---aaatgaaaagggtgatgagataacttaagaaaataaaattga 28150064  T
110 tccaaggattcttcaccttgattaatattagtgttactagtttcctgccaaagtttaacatcaacatcttgagtggtaa 188  Q
    ||| | || ||||||||||||| |  |||||||||||||||||||||| |    ||||||| ||| |||||||||||||    
28150063 tcctaagactcttcaccttgatcatcattagtgttactagtttcctgcaagttattaacatgaacttcttgagtggtaa 28149985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 11 - 190
Target Start/End: Complemental strand, 28037631 - 28037455
Alignment:
11 atcatcatttagaaaagctgaacaaagggtgggaaagaagagagttcaacttcatgaaaatgaaaagggtgacaaggtaacttaagaaaataaaactgat 110  Q
    |||||||||| || || ||||||| | ||||| ||||||| ||||| |||||||   |||||||||||||||  ||||||||| ||||||||| ||||||    
28037631 atcatcatttggataaactgaacagaaggtggaaaagaagcgagttaaacttca---aaatgaaaagggtgatgaggtaactttagaaaataacactgat 28037535  T
111 ccaaggattcttcaccttgattaatattagtgttactagtttcctgccaaagtttaacatcaacatcttgagtggtaaca 190  Q
    |||| || |||| |||||||  |  ||||||||||||||||||  ||||   ||| | ||||||||||| ||||||||||    
28037534 ccaaagagtctttaccttgaccatcattagtgttactagtttcgcgccagtttttgagatcaacatcttcagtggtaaca 28037455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 10 - 188
Target Start/End: Original strand, 27458794 - 27458965
Alignment:
10 catcatcatttagaaaagctgaacaaagggtgggaaagaagagagttcaacttcatgaaaatgaaaagggtgacaaggtaacttaagaaaataaaactga 109  Q
    |||||||||||||| || |||||||||  || | ||||||||| ||| |||||||   ||||||||||||||| ||| |||||    || || | | |||    
27458794 catcatcatttagagaaactgaacaaaaagttgcaaagaagagggttaaacttca---aaatgaaaagggtgataagataact----aatatcagattga 27458886  T
110 tccaaggattcttcaccttgattaatattagtgttactagtttcctgccaaagtttaacatcaacatcttgagtggtaa 188  Q
    ||||| || ||||||||||||| |   ||||| || |||||||||||||| | ||||||||||||||||||||||||||    
27458887 tccaaagagtcttcaccttgatcatccttagtcttgctagtttcctgccagattttaacatcaacatcttgagtggtaa 27458965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 131
Target Start/End: Original strand, 28479813 - 28479930
Alignment:
11 atcatcatttagaaaagctgaacaaagggtgggaaagaagagagttcaacttcatgaaaatgaaaagggtgacaaggtaacttaagaaaataaaactgat 110  Q
    ||||||||||| | || |||| |||| |||| || |||||||| || |||||||   ||||| |||||||||  |||||| |||||||||||||| ||||    
28479813 atcatcatttacagaaactgagcaaaaggtgtgagagaagagaattaaacttca---aaatgcaaagggtgatgaggtaaattaagaaaataaaattgat 28479909  T
111 ccaaggattcttcaccttgat 131  Q
    |||| || |||||||||||||    
28479910 ccaaagagtcttcaccttgat 28479930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 131
Target Start/End: Original strand, 28508996 - 28509113
Alignment:
11 atcatcatttagaaaagctgaacaaagggtgggaaagaagagagttcaacttcatgaaaatgaaaagggtgacaaggtaacttaagaaaataaaactgat 110  Q
    ||||||||||| | || |||| |||| |||| || |||||||| || |||||||   ||||| |||||||||  |||||| |||||||||||||| ||||    
28508996 atcatcatttacagaaactgagcaaaaggtgtgagagaagagaattaaacttca---aaatgcaaagggtgatgaggtaaattaagaaaataaaattgat 28509092  T
111 ccaaggattcttcaccttgat 131  Q
    |||| || |||||||||||||    
28509093 ccaaagagtcttcaccttgat 28509113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 183
Target Start/End: Complemental strand, 27776634 - 27776545
Alignment:
94 aagaaaataaaactgatccaaggattcttcaccttgattaatattagtgttactagtttcctgccaaagtttaacatcaacatcttgagt 183  Q
    |||||||||||| |||||||| || | ||||||||||| |  |||||| ||||||||||||||| |   || ||||||||||||||||||    
27776634 aagaaaataaaattgatccaaagagttttcaccttgatgatcattagtcttactagtttcctgcaagttttcaacatcaacatcttgagt 27776545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 139
Target Start/End: Complemental strand, 27378598 - 27378544
Alignment:
85 aggtaacttaagaaaataaaactgatccaaggattcttcaccttgattaatatta 139  Q
    ||||||| ||||||||||||| ||||||||  | ||||||||||||||| |||||    
27378598 aggtaacataagaaaataaaattgatccaaaaagtcttcaccttgattattatta 27378544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 229
Target Start/End: Complemental strand, 28151620 - 28151582
Alignment:
191 tcaccatcttcctacaaaattcatataaaagaatgatat 229  Q
    ||||| ||||||||||||||||| |||||||||||||||    
28151620 tcaccttcttcctacaaaattcaaataaaagaatgatat 28151582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 229
Target Start/End: Original strand, 27459011 - 27459051
Alignment:
189 catcaccatcttcctacaaaattcatataaaagaatgatat 229  Q
    |||| ||||| |||||||||||||| |||||||||||||||    
27459011 catcgccatcgtcctacaaaattcaaataaaagaatgatat 27459051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 15 - 188
Target Start/End: Complemental strand, 19265 - 19095
Alignment:
15 tcatttagaaaagctgaacaaagggtgggaaagaagagagttcaacttcatgaaaatgaaaagggtgacaaggtaacttaagaaaataaaactgatccaa 114  Q
    ||||||||| || ||||||||| |||| || ||||||||||| || ||||   |||||||||||||||  ||||||||||||||||||| | ||||||||    
19265 tcatttagagaaactgaacaaaaggtgtgagagaagagagttaaatttca---aaatgaaaagggtgatgaggtaacttaagaaaataatattgatccaa 19169  T
115 ggattcttcaccttgattaatattagtgttactagtttcctgccaaagtttaacatcaacatcttgagtggtaa 188  Q
     || ||||||||||||| |  | || ||||||||||||||||| |    |||||||||||||||||||||||||    
19168 agagtcttcaccttgatcatcaataatgttactagtttcctgcaagttattaacatcaacatcttgagtggtaa 19095  T

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Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 12 - 186
Target Start/End: Complemental strand, 8021021 - 8020852
Alignment:
12 tcatcatttagaaaagctgaacaaagggtgggaaagaagagagttcaacttcatgaaaatgaaaagggtgacaaggtaacttaagaaaataaaactgatc 111  Q
    |||||||||||| || ||||  ||||| ||||||||||||  ||| |||||||   |||||||||||| ||  || ||||||||||||| ||||| ||||    
8021021 tcatcatttagagaaactgagaaaagg-tgggaaagaagaaggtt-aacttca---aaatgaaaagggcgatgagataacttaagaaaagaaaaccgatc 8020927  T
112 caaggattcttcaccttgattaatattagtgttactagtttcctgccaaagtttaacatcaacatcttgagtggt 186  Q
    ||| |||||||||||| |||    |||||||||||||||||||||||| | || |||||||||||||||||||||    
8020926 caaagattcttcacctcgatcgtcattagtgttactagtttcctgccagatttcaacatcaacatcttgagtggt 8020852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 141
Target Start/End: Complemental strand, 22393571 - 22393515
Alignment:
85 aggtaacttaagaaaataaaactgatccaaggattcttcaccttgattaatattagt 141  Q
    ||||||| ||||||||||||| ||||||||  | |||||||||||||| ||||||||    
22393571 aggtaacataagaaaataaaattgatccaaaaagtcttcaccttgattgatattagt 22393515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 141
Target Start/End: Original strand, 52825 - 52881
Alignment:
85 aggtaacttaagaaaataaaactgatccaaggattcttcaccttgattaatattagt 141  Q
    ||||||| ||||||||||||| ||||||||  | |||||||||||||| ||||||||    
52825 aggtaacataagaaaataaaattgatccaaaaagtcttcaccttgattgatattagt 52881  T

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