View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13038_low_33 (Length: 245)

Name: NF13038_low_33
Description: NF13038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13038_low_33
NF13038_low_33
[»] chr3 (8 HSPs)
chr3 (13-245)||(8538920-8539153)
chr3 (175-243)||(28151896-28151964)
chr3 (177-240)||(28037689-28037752)
chr3 (175-245)||(17744321-17744391)
chr3 (175-245)||(19045641-19045711)
chr3 (175-236)||(27430809-27430870)
chr3 (175-232)||(27920463-27920520)
chr3 (175-243)||(11421466-11421534)
[»] chr2 (1 HSPs)
chr2 (175-245)||(8021075-8021145)
[»] chr1 (3 HSPs)
chr1 (5-55)||(19054383-19054434)
chr1 (21-55)||(12629264-12629298)
chr1 (29-73)||(15318104-15318148)
[»] scaffold0922 (1 HSPs)
scaffold0922 (175-245)||(1983-2053)
[»] chr6 (2 HSPs)
chr6 (13-55)||(24617740-24617782)
chr6 (24-56)||(13570493-13570525)
[»] chr4 (1 HSPs)
chr4 (13-55)||(34657920-34657962)
[»] chr5 (1 HSPs)
chr5 (13-73)||(22602038-22602099)
[»] scaffold0196 (1 HSPs)
scaffold0196 (24-56)||(792-824)


Alignment Details
Target: chr3 (Bit Score: 101; Significance: 4e-50; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 13 - 245
Target Start/End: Original strand, 8538920 - 8539153
Alignment:
Q  13 catcaagggaaaacaccgacatcccaactagattggcaccccgataacccccatcttatgcaaccaaacnnnnnnnnnnnnnnnnnnnnnnnnnggagaa 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                         ||||||    
T  8538920 catcaagggaaaacaccgacatcccaactagattggcaccccgataacccccatcttatgcaaccaaacaaaaaaaaattctttttaaaaaaaaggagaa 8539019  T
Q  113 gaatatgtacaagaggggggactataccaaaactctccaataacgatnnnnnnnnnnnnnntaa-taccttcagaaggctttgaaggagactgagatgga 211  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||               || |||||||||||||||||||||||||||||||||||    
T  8539020 gaatatgtacaagtggggggactataccaaaactctccaataacgataaaaaaaaaataaaaaaataccttcagaaggctttgaaggagactgagatgga 8539119  T
Q  212 atacaagagagtcttgatttggaaactaatattt 245  Q
    ||||||||||||||||||||||||||||||||||    
T  8539120 atacaagagagtcttgatttggaaactaatattt 8539153  T

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Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 175 - 243
Target Start/End: Complemental strand, 28151964 - 28151896
Alignment:
Q  175 aataccttcagaaggctttgaaggagactgagatggaatacaagagagtcttgatttggaaactaatat 243  Q
    ||||||||||||||||||||||||| ||||||||| |||| ||||| ||||||||||||||||||||||    
T  28151964 aataccttcagaaggctttgaaggaaactgagatgcaatagaagagggtcttgatttggaaactaatat 28151896  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 177 - 240
Target Start/End: Complemental strand, 28037752 - 28037689
Alignment:
Q  177 taccttcagaaggctttgaaggagactgagatggaatacaagagagtcttgatttggaaactaa 240  Q
    |||||||||||||| |||||||| | ||||||| |||| ||||| |||||||||||||||||||    
T  28037752 taccttcagaaggcattgaaggaaaatgagatgcaatagaagagggtcttgatttggaaactaa 28037689  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 245
Target Start/End: Original strand, 17744321 - 17744391
Alignment:
Q  175 aataccttcagaaggctttgaaggagactgagatggaatacaagagagtcttgatttggaaactaatattt 245  Q
    ||||||| ||| ||||||||||||| |||| |||| |||||||||  || |||||||||||||||||||||    
T  17744321 aatacctccagtaggctttgaaggatactgggatgcaatacaagatggtattgatttggaaactaatattt 17744391  T

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Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 245
Target Start/End: Original strand, 19045641 - 19045711
Alignment:
Q  175 aataccttcagaaggctttgaaggagactgagatggaatacaagagagtcttgatttggaaactaatattt 245  Q
    ||||||| ||| ||||||||||||| |||| |||| |||||||||  || |||||||||||||||||||||    
T  19045641 aatacctccagtaggctttgaaggatactgggatgcaatacaagatggtattgatttggaaactaatattt 19045711  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 27430809 - 27430870
Alignment:
Q  175 aataccttcagaaggctttgaaggagactgagatggaatacaagagagtcttgatttggaaa 236  Q
    |||| |||||| ||||||||||||| ||||||||| |||| ||||| |||||||||||||||    
T  27430809 aataacttcagcaggctttgaaggacactgagatgcaatataagagggtcttgatttggaaa 27430870  T

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Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 175 - 232
Target Start/End: Complemental strand, 27920520 - 27920463
Alignment:
Q  175 aataccttcagaaggctttgaaggagactgagatggaatacaagagagtcttgatttg 232  Q
    ||||||||||||||||||||||||| ||||||||| |||| |||||  ||||||||||    
T  27920520 aataccttcagaaggctttgaaggaaactgagatgcaatagaagaggttcttgatttg 27920463  T

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Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 243
Target Start/End: Complemental strand, 11421534 - 11421466
Alignment:
Q  175 aataccttcagaaggctttgaaggagactgagatggaatacaagagagtcttgatttggaaactaatat 243  Q
    ||||||||||  ||| ||| ||||| ||||||||| |||| ||||| ||||||||||||||||||||||    
T  11421534 aataccttcaacaggttttaaaggatactgagatgcaatataagagggtcttgatttggaaactaatat 11421466  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 245
Target Start/End: Complemental strand, 8021145 - 8021075
Alignment:
Q  175 aataccttcagaaggctttgaaggagactgagatggaatacaagagagtcttgatttggaaactaatattt 245  Q
    |||||||| || || |||||||||| ||||||||  |||| ||||| ||||||||||||||||||||||||    
T  8021145 aataccttgagtagactttgaaggacactgagattcaatagaagagggtcttgatttggaaactaatattt 8021075  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 55
Target Start/End: Original strand, 19054383 - 19054434
Alignment:
Q  5 atggacat-catcaagggaaaacaccgacatcccaactagattggcaccccg 55  Q
    |||||||| ||||||| | ||||||||||||||||||||| |||||||||||    
T  19054383 atggacatgcatcaagaggaaacaccgacatcccaactaggttggcaccccg 19054434  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 12629264 - 12629298
Alignment:
Q  21 gaaaacaccgacatcccaactagattggcaccccg 55  Q
    |||||||||||||||||||||||||||||| ||||    
T  12629264 gaaaacaccgacatcccaactagattggcatcccg 12629298  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 15318104 - 15318148
Alignment:
Q  29 cgacatcccaactagattggcaccccgataacccccatcttatgc 73  Q
    |||||||||||||||||||||||||  | |||||||||| |||||    
T  15318104 cgacatcccaactagattggcacccgcagaacccccatcctatgc 15318148  T

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Target: scaffold0922 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 245
Target Start/End: Complemental strand, 2053 - 1983
Alignment:
Q  175 aataccttcagaaggctttgaaggagactgagatggaatacaagagagtcttgatttggaaactaatattt 245  Q
    |||||||| || ||||||||||||| ||||||||  ||||  | ||||  |||||||||||||||||||||    
T  2053 aataccttgagcaggctttgaaggacactgagatacaatagtacagagctttgatttggaaactaatattt 1983  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 24617740 - 24617782
Alignment:
Q  13 catcaagggaaaacaccgacatcccaactagattggcaccccg 55  Q
    ||||||| | ||||||||||||||||||||| |||||||||||    
T  24617740 catcaagaggaaacaccgacatcccaactaggttggcaccccg 24617782  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 56
Target Start/End: Complemental strand, 13570525 - 13570493
Alignment:
Q  24 aacaccgacatcccaactagattggcaccccga 56  Q
    |||||| ||||||||||||||||||||||||||    
T  13570525 aacacctacatcccaactagattggcaccccga 13570493  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 34657920 - 34657962
Alignment:
Q  13 catcaagggaaaacaccgacatcccaactagattggcaccccg 55  Q
    ||||||| | ||||||||||||||||||||| |||||||||||    
T  34657920 catcaagaggaaacaccgacatcccaactaggttggcaccccg 34657962  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 22602038 - 22602099
Alignment:
Q  13 catcaagggaaaacaccgacatcccaactagattggcaccccg-ataacccccatcttatgc 73  Q
    ||||||||| || || ||||||||||||||| ||||||||||| | |||||||||| |||||    
T  22602038 catcaaggggaatcaacgacatcccaactaggttggcaccccgcagaacccccatcctatgc 22602099  T

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Target: scaffold0196 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 56
Target Start/End: Complemental strand, 824 - 792
Alignment:
Q  24 aacaccgacatcccaactagattggcaccccga 56  Q
    |||||||||||||||||||| ||||||||||||    
T  824 aacaccgacatcccaactaggttggcaccccga 792  T

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