View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13038_low_35 (Length: 240)
Name: NF13038_low_35
Description: NF13038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13038_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 19 - 225
Target Start/End: Original strand, 6201114 - 6201320
Alignment:
| Q |
19 |
attgacataaacaaaagaaaataaagaaagagttatttctaaccgagtcataaggagggtgggtagggaatttgaaaactcgtagaagacatttgttaag |
118 |
Q |
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| T |
6201114 |
attgacataaacaaaagtaaataaagaaagagttatttctaaccgagtcataaggagggtgggtagggaatttgaaaactcgtagaagacatttgttaag |
6201213 |
T |
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| Q |
119 |
gagggaagagaggaatggacagtggatcgtggagctgggttctaatgctgcaatacgtaacaagagagacttcatgctttgatcttgcatcattgtgtgc |
218 |
Q |
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| T |
6201214 |
gagggaagagaggaatggacagtggatcgtggagctgggttctaatgatgcaatacgtaacaagagagacttcatgctttgatcttgcatcattgtgtgc |
6201313 |
T |
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| Q |
219 |
ctctgtg |
225 |
Q |
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||||||| |
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| T |
6201314 |
ctctgtg |
6201320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 15 - 222
Target Start/End: Original strand, 43367405 - 43367613
Alignment:
| Q |
15 |
atcaattgacataaacaaaagaaaataaagaaagagtta-tttctaaccgagtcataaggagggtgggtagggaatttgaaaactcgtagaagacatttg |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||| ||||||||| |||| ||||||| | | |
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| T |
43367405 |
atcaattgacataaacaaaagaaaataaagaaagagttagtttctaaccgagtcataaggagggtgagtgggggatttgaaaattcgttgaagacaatgg |
43367504 |
T |
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| Q |
114 |
ttaaggagggaagagaggaatggacagtggatcgtggagctgggttctaatgctgcaatacgtaacaagagagacttcatgctttgatcttgcatcattg |
213 |
Q |
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|||| |||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||| | |
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| T |
43367505 |
ttaacgagggaggagaggagtggacagtggatcgtgtagctgggttctaatgctgcaatacgcaacaagagagacttcatcctttgatcttgcagcatgg |
43367604 |
T |
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| Q |
214 |
tgtgcctct |
222 |
Q |
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||||||||| |
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| T |
43367605 |
tgtgcctct |
43367613 |
T |
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