View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13038_low_37 (Length: 204)
Name: NF13038_low_37
Description: NF13038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13038_low_37 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 132; Significance: 9e-69; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 10 - 160
Target Start/End: Original strand, 9164783 - 9164934
Alignment:
| Q |
10 |
acatcatcaagggagtgtagtttgcactaagctatgcttatctttcatcttataagtggaaagaagaacaataaacaattgtagtaaatcgacattaagt |
109 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9164783 |
acatcataaagggagtgtagtttgcactaagctatgctcatctttcatcttataagtggaacgaagaacaataaacaattgtagtaaatcgacattaagt |
9164882 |
T |
|
| Q |
110 |
aaaaggaaagg-aagggagaagttaaaagtgaaaggaagaataaaacccata |
160 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9164883 |
aaaaggaaaggaaagggagaagttaaaagtgaaaggaagaataaaacccata |
9164934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 18 - 160
Target Start/End: Original strand, 9151968 - 9152105
Alignment:
| Q |
18 |
aagggagtgtagtttgcactaagctatgcttatctttcatcttataagtggaaagaagaacaataaacaattgtagtaaatcgacattaagtaaaaggaa |
117 |
Q |
| |
|
|||||||| || |||||||| |||||||||||||||||||||||||||||||| |||||||| ||| |||| |||||||| || | |||||||||||| |
|
|
| T |
9151968 |
aagggagtataatttgcactgagctatgcttatctttcatcttataagtggaacaaagaacaacaaa-aattatagtaaatagaaagtaagtaaaagga- |
9152065 |
T |
|
| Q |
118 |
aggaagggagaagttaaaagtgaaaggaagaataaaacccata |
160 |
Q |
| |
|
||||||||||| ||||| ||||| | |||||||||||||| |
|
|
| T |
9152066 |
---aagggagaagtgaaaagagaaagaaggaataaaacccata |
9152105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 23 - 120
Target Start/End: Complemental strand, 9179671 - 9179574
Alignment:
| Q |
23 |
agtgtagtttgcactaagctatgcttatctttcatcttataagtggaaagaagaacaataaacaattgtagtaaatcgacattaagtaaaaggaaagg |
120 |
Q |
| |
|
|||||| |||||| | ||||||||||||| ||||| |||| ||||||| |||||||| ||| ||||||||||||||| | ||||||||| |||||| |
|
|
| T |
9179671 |
agtgtaatttgcattgagctatgcttatcgttcattttattagtggaacaaagaacaacaaaatattgtagtaaatcgaaagtaagtaaaaagaaagg |
9179574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University