View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13038_low_4 (Length: 563)
Name: NF13038_low_4
Description: NF13038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13038_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 506; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 1 - 550
Target Start/End: Original strand, 54075674 - 54076214
Alignment:
| Q |
1 |
aaggattatgcacttggatgatgtatgtggatgttgatgaattcatgtatttaccctcttggagaaataatgggttccacttcaattcaaatgaattacc |
100 |
Q |
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| T |
54075674 |
aaggattatgcacttggatgatgtatgtggatgttgatgaattcatgtatttaccctcttggagaaataatgggttccacttcaattcaaatgaattacc |
54075773 |
T |
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| Q |
101 |
ttcgttgaaatcaattttaccgcgggaggacaagggtggagaacaaagtagaattggacaggtgtcaatgatgtgtttagaatttgggccatcaggtcaa |
200 |
Q |
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| T |
54075774 |
ttcgttgaaatcaattttaccgcgggaggacaagggtgg---------tagaattggacaggtgtcaatgatgtgtttagaatttgggccatcaggtcaa |
54075864 |
T |
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| Q |
201 |
agacaacacccgaaagaaggggtaacacaagggtacacgtgtcggaggaaagtggaacaaagacacaaatcaattgtgttggtagaagcagttgatagaa |
300 |
Q |
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| T |
54075865 |
cgacaacacccgaaagaaggggtaacacaggggtacacgtgtcggaggaaagtggaacaaagacacaaatcaattgtgttggtagaagcagttgatagaa |
54075964 |
T |
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| Q |
301 |
gtttgtggaatgtgatacatcattttcaagtgaatgagaaacaagggtttagatcgaaacaacttggtcccgaagagggtttggtgaatcattataagta |
400 |
Q |
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| T |
54075965 |
gtttgtggaatgtgatacatcattttcaagtgaatgagaaacaagggtttagatcgaaacaacttggtcccgaagagggtttggtgaatcactataagta |
54076064 |
T |
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| Q |
401 |
ccaagcgtgggttgagtttaagagcaaatttagaaggagagtgtctgcttatgttgtggattggagacaagctatgaacccaaactcgcaagataggaca |
500 |
Q |
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| T |
54076065 |
ccaagcgtgggttgagtttaagagcaaatttagaaggagagtgtctgcttatgttgtggattggagacaagctatgaacccaaactcgcaagataggaca |
54076164 |
T |
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| Q |
501 |
cctgggttaggatttgaggctgttgaacctaaagattggacacacaggtt |
550 |
Q |
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| T |
54076165 |
cctgggttaggatttgaggctgttgaacctaaagattggacacacaggtt |
54076214 |
T |
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