View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13038_low_5 (Length: 561)
Name: NF13038_low_5
Description: NF13038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13038_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 20 - 549
Target Start/End: Original strand, 28288487 - 28289014
Alignment:
| Q |
20 |
ggtgaagaatttaagtaacttaattcgaacttttagacaatagacctcaacacttagaagcacaaacttatcaactactatgttacatcccaattgttca |
119 |
Q |
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| T |
28288487 |
ggtgaagaatttaagtaacttaattcgaacttttaaacaatagacctcaacacttagaagcacaaacttatcaactactatgttacatcccaattgttca |
28288586 |
T |
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| Q |
120 |
ataatccaaatggaactttgcaaactttgttaatggtattatattctatttggaaaccataaatttttccaataatannnnnnnnnnatatttgataaac |
219 |
Q |
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| T |
28288587 |
ataatccaaatggaactttgcaaactttgttaatggtattatattctatttggaaaccataaatttttccgataatattttttttttatatttgataaac |
28288686 |
T |
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| Q |
220 |
tagagtttgcaagttgagtctacaaaagctccaccagttcaagtatccttgtttaacgtgagtatcttcaagttttgatatttatccaacccagtccata |
319 |
Q |
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| T |
28288687 |
tagagtttgcaagttgagtctacaaaagctccaccagttcaagtatccttgtttaacatgagtatcttcaagttttgatatttatccaacccagtccata |
28288786 |
T |
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| Q |
320 |
ggctaatttgtaactgatagagttatgaacttggtgttaaaaattgttgtcttca------agaatgtagcaatttcttgctgcgtagaggatgtctgaa |
413 |
Q |
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| T |
28288787 |
ggctaatttgtaactg--agagttatgaacttggtgttaaaaattgttgtcttcaattcacagaatgtagcaatttcttactgcgtaga-gatgtctgaa |
28288883 |
T |
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| Q |
414 |
gaataaaggggatataatttgtgctagtctcagggaatcattattttccaaagccaaacttaaaattaaggaggtgtcataatcacatgcctcaaaggca |
513 |
Q |
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| T |
28288884 |
gaataaaggggatatagtttgtgctagtctca-ggaatcattattttccaaagccaaac-taaaatta---aggtgtcataatcacatgcctcaaaggca |
28288978 |
T |
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| Q |
514 |
tcattcttctcaagaaaagttccctcattctagtat |
549 |
Q |
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| T |
28288979 |
ccattcttctcaagaaaagttccctcattctagtat |
28289014 |
T |
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