View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13038_low_8 (Length: 476)
Name: NF13038_low_8
Description: NF13038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13038_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 21 - 471
Target Start/End: Complemental strand, 42349268 - 42348818
Alignment:
| Q |
21 |
ataaggatctgatccagccccaataaacaccaaatgagtcccatcaaattcctccacatcaggacatcctacaatcatgcacatggcaaaaaatcacaat |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
42349268 |
ataaggatctgatccagccccaataaacaccaaatgagtcccatcaaattcctccacatcaggacatcctacaatcatgcacatagcaaaaaatcacaat |
42349169 |
T |
|
| Q |
121 |
gcatacctaacatacactactctgcgcactgtgatcctacgcaactcgacggtttagtttctacatttatgtgtggaggatacatggtttacacacacaa |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42349168 |
gcatacctaacatacactactctgcgcactgtgatcctacgcaactcgacggtttagtttctacatttatgtgtggaggatacatggtttacacacacaa |
42349069 |
T |
|
| Q |
221 |
aaaacattaacaaatttatgaagagtgcataccactttcgacacaaatctcaatttcattttgatcattcccctgaagaacagccctgaaatctccttcc |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42349068 |
aaaacattaacaaatttatgaagagtgcataccactttcgacacaaatctcaatttcattttgatcattcccctgaagaacagccctgaaatctccttcc |
42348969 |
T |
|
| Q |
321 |
aaaagaggtaacaaaaccgcgtaggtagaaccgtcttggtcttgttctccattgtcgatccctccctcaatatcacaacccttatgtgcttcaataagca |
420 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42348968 |
aaaagaggtaacaaaaccgcgtaggtagaaccatcttggtcttgttctccattgtcgatccctccctcaatatcacaacccttatgtgcttcaataagca |
42348869 |
T |
|
| Q |
421 |
agaactgtgtctcaaaggggatttcttgtccacaattccccattctctgtg |
471 |
Q |
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| T |
42348868 |
agaactgtgtctcaaaggggatttcttgtccacaattccccattctctgtg |
42348818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 19 - 97
Target Start/End: Complemental strand, 19057525 - 19057447
Alignment:
| Q |
19 |
tcataaggatctgatccagccccaataaacaccaaatgagtcccatcaaattcctccacatcaggacatcctacaatca |
97 |
Q |
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| T |
19057525 |
tcataaggatctgatccagccccaataaacaccaaatgagtcccatcaaattcctccacatcaggacatcctacaatca |
19057447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 240 - 358
Target Start/End: Complemental strand, 19057310 - 19057201
Alignment:
| Q |
240 |
gaagagtgcataccactttcgacacaaatctcaatttcattttgatcattcccctgaagaacagccctgaaatctccttccaaaagaggtaacaaaaccg |
339 |
Q |
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||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||| |||||||||||| |
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| T |
19057310 |
gaagagtacataccactttcgacacaaatctcaatttcatt---------cccctgaagagcagccctgaaatctccttccagaagtggtaacaaaacca |
19057220 |
T |
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| Q |
340 |
cgtaggtagaaccgtcttg |
358 |
Q |
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||||||||||||| ||||| |
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| T |
19057219 |
cgtaggtagaaccatcttg |
19057201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 50804660 - 50804742
Alignment:
| Q |
19 |
tcataaggatctgatccagccccaataaacaccaaatgagtcccatcaaattcctcca---catcaggacatcctacaatcat |
98 |
Q |
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| T |
50804660 |
tcataaggatctgatccagccccaataaacaccaaatgagtcccatcaaattgctccacatcatcaggacatcctacaatcat |
50804742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 50871217 - 50871135
Alignment:
| Q |
19 |
tcataaggatctgatccagccccaataaacaccaaatgagtcccatcaaattcctcca---catcaggacatcctacaatcat |
98 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |
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| T |
50871217 |
tcataaggatctgatccagccccaataaacaccaaatgagtcccatcaaattgctccacatcatcaggacatcctacaatcat |
50871135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 240 - 358
Target Start/End: Original strand, 50804878 - 50804987
Alignment:
| Q |
240 |
gaagagtgcataccactttcgacacaaatctcaatttcattttgatcattcccctgaagaacagccctgaaatctccttccaaaagaggtaacaaaaccg |
339 |
Q |
| |
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||||||| |||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||| |||||||||||| |
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| T |
50804878 |
gaagagtacataccactttcaacacaaatctcaatttcat---------tcccctgaagagcagccctgaaatctccttccagaagtggtaacaaaacca |
50804968 |
T |
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| Q |
340 |
cgtaggtagaaccgtcttg |
358 |
Q |
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||||||||||||| ||||| |
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| T |
50804969 |
cgtaggtagaaccatcttg |
50804987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 240 - 358
Target Start/End: Complemental strand, 50870999 - 50870890
Alignment:
| Q |
240 |
gaagagtgcataccactttcgacacaaatctcaatttcattttgatcattcccctgaagaacagccctgaaatctccttccaaaagaggtaacaaaaccg |
339 |
Q |
| |
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||||||| |||||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||| |||||||||||| |
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| T |
50870999 |
gaagagtacataccactttcaacacaaatctcaatttcatt---------cccctgaagagcagccctgaaatctccttccagaagtggtaacaaaacca |
50870909 |
T |
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| Q |
340 |
cgtaggtagaaccgtcttg |
358 |
Q |
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||||||||||||| ||||| |
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| T |
50870908 |
cgtaggtagaaccatcttg |
50870890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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