View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13038_low_9 (Length: 463)
Name: NF13038_low_9
Description: NF13038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13038_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-122; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 7 - 292
Target Start/End: Complemental strand, 18233797 - 18233493
Alignment:
| Q |
7 |
cctggatctatgaacaagttttgcgatctcatatatcagaatgggaaaagatattctttgtttaacattggtttcgtaatctctcaaggttgtgaataga |
106 |
Q |
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| T |
18233797 |
cctggatctatgaacaacttttgcgatctcatatattagaatgggaaaagatattctttgtttaacattggtttcgtaatctctcaaggttgtgaataga |
18233698 |
T |
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| Q |
107 |
ttctacagacttttatatattcacagtttttcattctcatatatcaagtagtcattattactaaaaagaatttggctgttgatct--------------- |
191 |
Q |
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| T |
18233697 |
ttctacagacttttatatattcacagtttttcattctcatatatcgagtagtcattattactaaaaagaatttggttgttgatcttgagtagtgctcaac |
18233598 |
T |
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| Q |
192 |
----tttgtgttgatcaggctttaacacacaaggtgttctctaacctcacatactttcaattgtagcttcaacttcagatatatagacattgaagttcac |
287 |
Q |
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| T |
18233597 |
acagtttgtgttgattaggctttaacacacaaggtgttctctaacctcacatactttcaattgtagcttcaacttcagatatatagacattgaagttcac |
18233498 |
T |
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| Q |
288 |
ggcat |
292 |
Q |
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| T |
18233497 |
ggcat |
18233493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 290 - 430
Target Start/End: Complemental strand, 18233461 - 18233321
Alignment:
| Q |
290 |
catatttcagcaacttttcaaagagagttaagtttatataaatactacttaaagaatatagccgttgagagatgaggtaggatccgtactatgttgtgga |
389 |
Q |
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| T |
18233461 |
catatttcagcaactcttcaaagagagttaagtttatataaatactacttaaagaatatagttgttgagagatgaggtaggatccgtactaagttgtgga |
18233362 |
T |
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| Q |
390 |
agggcttgtacgattttgaagacacggacttgtacaattaa |
430 |
Q |
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| T |
18233361 |
agggctagtacgattttgaagacacggacttgtacaattaa |
18233321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 54 - 118
Target Start/End: Original strand, 46787420 - 46787484
Alignment:
| Q |
54 |
aagatattctttgtttaacattggtttcgtaatctctcaaggttgtgaatagattctacagactt |
118 |
Q |
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| T |
46787420 |
aagatgttttttgtttgacattggtttcctaatctttcaaagttgtgaatagattctaaagactt |
46787484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 300 - 369
Target Start/End: Complemental strand, 3509265 - 3509196
Alignment:
| Q |
300 |
caacttttcaaagagagttaagtttatataaatactacttaaagaatatagccgttgagagatgaggtag |
369 |
Q |
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| T |
3509265 |
caactctttaaaaagagttaaggtcatataaatattacttgaagaatatacccattgagagatgaggtag |
3509196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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