View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13039_high_1 (Length: 737)
Name: NF13039_high_1
Description: NF13039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13039_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 650; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 650; E-Value: 0
Query Start/End: Original strand, 18 - 721
Target Start/End: Original strand, 37701714 - 37702417
Alignment:
| Q |
18 |
gagacatatagaacaacaataaaccaattcaaacagacccttagtctaacttaagtaaccatgtaactaattattgtaactaactattacaactaataat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37701714 |
gagacatatagaacaacaataaaccaattcaaacagacccttagtctaacttaagtaaccatgtaactaattattgtaactaactattacaactaataat |
37701813 |
T |
|
| Q |
118 |
actatttctcaacaaaatccaaattcattcattatctagtgtaataaacttcaacttaaaccagtaataaatcatcaaaattctgaccaatcatgtggaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37701814 |
actatttctcaacaaaatccaaattcattcattatctagtgtaataaacttcaacttaaaccagtaataaatcatcaaaattctgaccaatcatgtggaa |
37701913 |
T |
|
| Q |
218 |
tttcttaagtaaacaacattactccatatactatatcccctaataataacaagagtttatgatcccaattagagcaattaaaattaaactgaaatcaatc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37701914 |
tttcttaagtaaacaacattactccatatactatatcccctaataataacaagagtttatgatcccaattagagcaattaaaattaaactgaaatcaatc |
37702013 |
T |
|
| Q |
318 |
aagctttataatgagnnnnnnncactcacatcaatgaaatcagtgagaaaacaagccggcataactttgaaaggcttaacaaaagtaagcttaacaagct |
417 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37702014 |
aagctttataatgagaaaaaaacactcacatcaatgaaatcagtgagaaaacaagccggcataactttgaaaggcttaacaaaagtaagcttaacaagct |
37702113 |
T |
|
| Q |
418 |
gcttcatcttctctggagtctgaggaatcaaaatcatagcagcttcatcaatattcttaaccacaaacaatccattctccatatccttatcttccaaaca |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37702114 |
gcttcatcttctctggagtctgaggaatcaaaatcatagcagcttcatcaatattcttaaccacaaacaatccattctccatatccttatcttccaaaca |
37702213 |
T |
|
| Q |
518 |
aaccccagcacnnnnnnncgcaactttatccactctctccgccaacaaaaccaccataactaacaccaacaacattcattctcctcacacaatgcgcttc |
617 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
37702214 |
aaccccagcacaacaaaacgcaactttctccactctctccgccaacaaaaccaccataactaacaccaacaacattcattctcctcgcacaatgcgcttc |
37702313 |
T |
|
| Q |
618 |
catgagagcagcaacacactgagcttgaaaagattcggttcgattaggtttagaggtgtgagcctcaccgaagaagagaagatcgggaacgtagaggttg |
717 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
37702314 |
catgagagcagcaacacactgagcttgaaaagattcggttcgattaggtttagaggtgtgagcctcaccgaagaagagaagatcgggaacgtagatgttg |
37702413 |
T |
|
| Q |
718 |
aaac |
721 |
Q |
| |
|
|||| |
|
|
| T |
37702414 |
aaac |
37702417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 107
Target Start/End: Complemental strand, 10223519 - 10223490
Alignment:
| Q |
78 |
atgtaactaattattgtaactaactattac |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
10223519 |
atgtaactaattattgtaactaactattac |
10223490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 66; Significance: 9e-29; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 559 - 708
Target Start/End: Original strand, 16511484 - 16511633
Alignment:
| Q |
559 |
ccaacaaaaccaccataactaacaccaacaacattcattctcctcacacaatgcgcttccatgagagcagcaacacactgagcttgaaaagattcggttc |
658 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| || || ||||||| ||| ||| ||||||||||||||||||||||||||||||||| | | | || |
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|
| T |
16511484 |
ccaacaaagccaccataactaacaccaacaacatacaaacttctcacaccatgtgctcccatgagagcagcaacacactgagcttgaaaagctacagatc |
16511583 |
T |
|
| Q |
659 |
gattaggtttagaggtgtgagcctcaccgaagaagagaagatcgggaacg |
708 |
Q |
| |
|
|| |||| || |||||||| || ||||||||||||||||| |||||| |
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|
| T |
16511584 |
gaacaggtaaagtggtgtgagattcgccgaagaagagaagatcaggaacg |
16511633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 120
Target Start/End: Original strand, 14201304 - 14201342
Alignment:
| Q |
82 |
aactaattattgtaactaactattacaactaataatact |
120 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
14201304 |
aactaattattgtaactaactattacatctaataatact |
14201342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 79 - 115
Target Start/End: Complemental strand, 29051325 - 29051289
Alignment:
| Q |
79 |
tgtaactaattattgtaactaactattacaactaata |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| |
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|
| T |
29051325 |
tgtaactaattattgtaactaactattacatctaata |
29051289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 62 - 107
Target Start/End: Original strand, 486588 - 486634
Alignment:
| Q |
62 |
tctaacttaagtaacca-tgtaactaattattgtaactaactattac |
107 |
Q |
| |
|
|||||||||| |||||| ||||||| ||||||||||||||||||||| |
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|
| T |
486588 |
tctaacttaactaaccagtgtaactgattattgtaactaactattac |
486634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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