View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13039_high_7 (Length: 390)
Name: NF13039_high_7
Description: NF13039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13039_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 7 - 176
Target Start/End: Original strand, 51904931 - 51905100
Alignment:
| Q |
7 |
tcgaagaatatcggtacataaaatgatagaagacgtgccttcttaagtgcaaggccatctttctcaggaacaattccatggattgcaaccaaaacttcta |
106 |
Q |
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| T |
51904931 |
tcgaaaaatatcggtacataaaatgatagaagacgtgccttcttaagtgctaggccatctttctcaggaacaattccatggattgcaaccaaaacttcta |
51905030 |
T |
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| Q |
107 |
caggtgttaaagctggacctgtatgagctgaaccctgccatgaatagcttagaatacttagcacccattt |
176 |
Q |
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| T |
51905031 |
caggtgttaaagctggacctgtatgagctgaaccctgccatgaatagcttagaatacttagcacccattt |
51905100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 216 - 369
Target Start/End: Original strand, 51905135 - 51905287
Alignment:
| Q |
216 |
ttgggataaagaatatatgaacagttccaatgaaaagctttaaatactccgttaaaatttcactctgttcaggctaacttaaatataggtcgcattgatt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51905135 |
ttgggataaagaatatatgaacagttccaatgaaaagctttaaatactccgttaaaatttcactctgttcaggctaacttaaatataggtcgcattgatt |
51905234 |
T |
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| Q |
316 |
gtacccaaaaaggaaaacttatttatggaagtggggtgagaattaagagtgcta |
369 |
Q |
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| T |
51905235 |
gtacccaaaaagg-aaacttatttatggaagtggggtgagaattaagagtgcta |
51905287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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