View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13039_low_10 (Length: 383)
Name: NF13039_low_10
Description: NF13039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13039_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 18 - 339
Target Start/End: Original strand, 38274887 - 38275205
Alignment:
| Q |
18 |
ccatttccaccaccattcacataacctctaacagaaccattgctaccattgacaacccttccatttccgctccatttcacatcgctcactgctctttctt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
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| T |
38274887 |
ccatttccaccaccattcacataacctctaacagaaccattgctaccattgacaacagttccatttccgctccatttcacatcgctcactattctttctt |
38274986 |
T |
|
| Q |
118 |
caaccaatgcaccttcttccttcaaagcacgaatttgagtgggaagaatgcaaaatctagagttagaacaacgacgacgttttggtgtgaattgaggagc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
38274987 |
caaccaatgcaccttcttccttcaaagcacgaatttgagtgggaagaatgcaaaatctagagttag---aacgacgacgttttggtgtgaattgaggagc |
38275083 |
T |
|
| Q |
218 |
aagaaaattgagttcggttaagagtagagaagatgaagaagccattgataagtgtggttactgaaacaagagagtgaggatcaaactcaaaccctagttt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38275084 |
aagaaaattgagttcggttaagagtagagaagatgaagaagccattgataagtgtggttactgaaacaagagagtgaggatcaaactcaaaccctagttt |
38275183 |
T |
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| Q |
318 |
tcatggagcgtgagtgtgattt |
339 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
38275184 |
tcatggagcgtgagtgtgattt |
38275205 |
T |
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