View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13039_low_11 (Length: 380)
Name: NF13039_low_11
Description: NF13039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13039_low_11 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 137; Significance: 2e-71; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 222 - 362
Target Start/End: Complemental strand, 4113835 - 4113695
Alignment:
| Q |
222 |
tttccgacatttgattaaatgcacaaaacaacattaagaatcaagaccctaaaaacaaaacaacattaaatccagaaaatgaaggaaaacccattaatta |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4113835 |
tttccgacatttgattaaatgcacaaaacaacattaagaatcaagaccctaaaaacaaaacaacattaaatccagaaaatgaaggaaaacccattaatta |
4113736 |
T |
|
| Q |
322 |
tttgtcaaacagaatcaaacccagaagttaaaacacataaa |
362 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
4113735 |
tttgtcaaacaaaatcaaacccagaagttaaaacacataaa |
4113695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 52 - 108
Target Start/End: Complemental strand, 4114018 - 4113962
Alignment:
| Q |
52 |
aaatcaacaacatgaagcatgaaactgaacaatcagattctacattagaaattacag |
108 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4114018 |
aaatcaacaacatgaagcatgaaactgaaaaatcagattctacattagaaattacag |
4113962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 4114084 - 4114035
Alignment:
| Q |
11 |
cacagactaaagtactcaaacaacattgtaacattacaatcaaatcaaca |
60 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
4114084 |
cacaaactaaagtactcaaacaacattgtaacatcacaatcaaatcaaca |
4114035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University