View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13039_low_12 (Length: 339)
Name: NF13039_low_12
Description: NF13039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13039_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 6 - 321
Target Start/End: Original strand, 2627860 - 2628175
Alignment:
| Q |
6 |
gtcgaagaaaatgggagctacgatgaggttttctgtgtaacatcaaccccctatgattcacacatgtaattgaattttgtttttctttgattttctaccg |
105 |
Q |
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| T |
2627860 |
gtcgtagaaaattggagctaccatgaggttttctgtgtaacatcaaccccctatgattcacacatgtaattgaattttgtttttctttgattttctacca |
2627959 |
T |
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| Q |
106 |
ccttatcatatatcctttgtttgcaaagttgttctgtgtcaaggttgtaacaaggtgttgcatctcaccaaaactttcgaaatgaaatccgaagaggcag |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
2627960 |
ccttatcatatatcctttgtttgcaaagttgttctgtgtcaaggttgtaacaaggtgttgcgtctcaccaaaactttcgaaatgaaatccgaagaggcag |
2628059 |
T |
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| Q |
206 |
cagtagcactagtggagagagaaccatgtactggagagttagccatgaacctcaagcttccacgcctgcatttggagacagcgcaggaaatgtcccctca |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2628060 |
cagtagcactagtggagagagaaccatgtactggagagttagccatgaacctcaagcttccacgcctgcatttggagacagcgcaggaaatgtcccctca |
2628159 |
T |
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| Q |
306 |
cggctggagatggtcc |
321 |
Q |
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|||||||||||||||| |
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| T |
2628160 |
cggctggagatggtcc |
2628175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 2553220 - 2553176
Alignment:
| Q |
205 |
gcagtagcactagtggagagagaaccatgtactggagagttagcc |
249 |
Q |
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| T |
2553220 |
gcagtagcactagtggagagaaaaccatggactggagagttagcc |
2553176 |
T |
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