View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13039_low_13 (Length: 303)
Name: NF13039_low_13
Description: NF13039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13039_low_13 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 47462199 - 47461903
Alignment:
| Q |
1 |
ttcccatgttaaacctcacctatgttttaatcatatttccttcattttttgagatcagagcttttccaaaagaatgcagaagaagatgaggaataacttt |
100 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
47462199 |
ttcccatgctaaatctcacctatgttttaatcatatttccttcattttttgagatcagaggttttccaaa-gaatgcagaagaagatgaggaataacttt |
47462101 |
T |
|
| Q |
101 |
ttgaaaataattattaaataataaaggctgagattttccggcttagttttcctagacttgcttatatagtcttctttctaaacttttacaaccatccaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47462100 |
ttgaaaataattattaaataataaaggctgagattttccggcttagttttcctagacttgcttatatagtcttctttctaaacttttacaaccatccaat |
47462001 |
T |
|
| Q |
201 |
atccatatcaaaataaccacaaccacaacccatctatatgaatcatcatgttttcttaaatctaatttctttgacaaccaccatgagatgatgtccat |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
47462000 |
atccatatcaaaataaccacaaccacaacccatctatatgaatcatcatcttttcttaaatctaatttctttgacaaccaccatgagaagatgtccat |
47461903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 260 - 299
Target Start/End: Complemental strand, 47468886 - 47468847
Alignment:
| Q |
260 |
atctaatttctttgacaaccaccatgagatgatgtccatc |
299 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
47468886 |
atctaatttctttgacaaccaccatgagaagatgtccatc |
47468847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University