View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13039_low_16 (Length: 260)
Name: NF13039_low_16
Description: NF13039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13039_low_16 |
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| [»] chr7 (1 HSPs) |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 14 - 260
Target Start/End: Complemental strand, 10593630 - 10593384
Alignment:
| Q |
14 |
cataggtaacagctagacccacaatgccttcaaagatcagaaaaattacactgagacacaattatgcccaacttttcattacacaggatgagtaagtttt |
113 |
Q |
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|||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10593630 |
cataggtaacagctagacccacaatgccttaaaagatcaaaaaaattacactgagacacaattatgcccaacttttcattacacaggatgagtaagtttt |
10593531 |
T |
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| Q |
114 |
gatcgatatatgattccaggtggaatcgatatcaagaatatcaaagtaaaggcaaatgtgatcaaagacgacatgtctaaactgaaacatttataaccat |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
10593530 |
gatcgatatatgattccaggtggaatcgatatcaagaatatcaaagtaaaggaaaatgtgatcaaagacgacatgtctaaactgaaacatatataaccat |
10593431 |
T |
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| Q |
214 |
tccgtagcagcagcaatgttcaactttggccgagaatacctattaat |
260 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
10593430 |
tccgtagcagcagcaatgttcaactttggccgagaatacccattaat |
10593384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 91; Significance: 4e-44; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 122 - 253
Target Start/End: Complemental strand, 14375686 - 14375559
Alignment:
| Q |
122 |
tatgattccaggtggaatcgatatcaagaatatcaaagtaaaggcaaatgtgatcaaagacgacatgtctaaactgaaacatttataaccattccgtagc |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||| ||||| ||||||||||| |||| |
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| T |
14375686 |
tatgattccaggtggaatcgatatcaagaatatcaaagaaaaggcaaatgtgatcaaagacaacatatctaaacggaaac----ataaccattccatagc |
14375591 |
T |
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| Q |
222 |
agcagcaatgttcaactttggccgagaatacc |
253 |
Q |
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| T |
14375590 |
agcagcaatgttgaactttggccgagaatacc |
14375559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 122 - 253
Target Start/End: Original strand, 41436323 - 41436450
Alignment:
| Q |
122 |
tatgattccaggtggaatcgatatcaagaatatcaaagtaaaggcaaatgtgatcaaagacgacatgtctaaactgaaacatttataaccattccgtagc |
221 |
Q |
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|||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||| |||| ||||| | ||| | ||||||||||| |||| |
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| T |
41436323 |
tatgattccaggtggaatcgatatcaagaatatcaaggaaaaggcaaatgtgatggaagacaacatatctaagcggaagc----ataaccattccatagc |
41436418 |
T |
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| Q |
222 |
agcagcaatgttcaactttggccgagaatacc |
253 |
Q |
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| T |
41436419 |
agcaacaatattgaactttggccgagaatacc |
41436450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 122 - 253
Target Start/End: Original strand, 41449536 - 41449663
Alignment:
| Q |
122 |
tatgattccaggtggaatcgatatcaagaatatcaaagtaaaggcaaatgtgatcaaagacgacatgtctaaactgaaacatttataaccattccgtagc |
221 |
Q |
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|||||||||||||||||||||||||||||||||||| | ||||||||| ||||| ||||| |||| ||||| | ||| | ||||||||||| |||| |
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| T |
41449536 |
tatgattccaggtggaatcgatatcaagaatatcaaggaaaaggcaaacgtgatggaagacaacatatctaagcggaagc----ataaccattccatagc |
41449631 |
T |
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| Q |
222 |
agcagcaatgttcaactttggccgagaatacc |
253 |
Q |
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||||||||| || ||||||||||||||||||| |
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| T |
41449632 |
agcagcaatattgaactttggccgagaatacc |
41449663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 123 - 253
Target Start/End: Original strand, 14238453 - 14238579
Alignment:
| Q |
123 |
atgattccaggtggaatcgatatcaagaatatcaaagtaaaggcaaatgtgatcaaagacgacatgtctaaactgaaacatttataaccattccgtagca |
222 |
Q |
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|||||||||||||||||||||||||||||| ||| | |||||||||| |||| ||||| |||| ||||| | ||| ||||||||||| ||||| |
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| T |
14238453 |
atgattccaggtggaatcgatatcaagaatgccaaggaaaaggcaaatatgatggaagacaacatatctaagcgtaaa----gataaccattccatagca |
14238548 |
T |
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| Q |
223 |
gcagcaatgttcaactttggccgagaatacc |
253 |
Q |
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|||| |||||| || |||||||||||||||| |
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| T |
14238549 |
gcagaaatgttgaaatttggccgagaatacc |
14238579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 14 - 64
Target Start/End: Complemental strand, 14376964 - 14376914
Alignment:
| Q |
14 |
cataggtaacagctagacccacaatgccttcaaagatcagaaaaattacac |
64 |
Q |
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| T |
14376964 |
cataggtaacagctagaccagcaatgccttcaaaaatcagaaaaatgacac |
14376914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 41436186 - 41436230
Alignment:
| Q |
14 |
cataggtaacagctagacccacaatgccttcaaagatcagaaaaa |
58 |
Q |
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| T |
41436186 |
cataggtaacagctagaccagcaatgccttcaaaaatcaggaaaa |
41436230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 122 - 260
Target Start/End: Original strand, 32119103 - 32119238
Alignment:
| Q |
122 |
tatgattccaggtggaatc-gatatcaagaatatcaaagtaaaggcaaatgtgatcaaagacgacatgtctaaactgaaacatttataaccattccgtag |
220 |
Q |
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|||||||||||||||| || ||||||||||||||||||| |||| ||||| ||||||||||| |||| |||| || || || ||||||||||| ||| |
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| T |
32119103 |
tatgattccaggtggattctgatatcaagaatatcaaagaaaagacaaatctgatcaaagacaacatatctatacggagac----ataaccattccatag |
32119198 |
T |
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| Q |
221 |
cagcagcaatgttcaactttggccgagaatacctattaat |
260 |
Q |
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| T |
32119199 |
cagcagcaatgttgaactttggcaaagaatatccattaat |
32119238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 127
Target Start/End: Original strand, 32118988 - 32119075
Alignment:
| Q |
43 |
tcaaagatcagaaaaattacact---gagacacaattatgcccaacttttcattacacaggatgagtaagttttgatcgatatatgat |
127 |
Q |
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||||| ||||||||||| ||||| |||| ||||||||||| ||||| ||| |||||| | |||||| ||||||| |||||||||| |
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| T |
32118988 |
tcaaaaatcagaaaaatgacactaaggagagacaattatgcctaacttctcaatacacaagcagagtaaattttgattgatatatgat |
32119075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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