View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13039_low_17 (Length: 259)
Name: NF13039_low_17
Description: NF13039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13039_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 18 - 249
Target Start/End: Complemental strand, 47462407 - 47462176
Alignment:
| Q |
18 |
aaaacccgtttcacgagtgccatcgcaagcaaaagttccactatatttgttgaatgttttgagacattaaccccacaacctgcgtgaatttcggacagta |
117 |
Q |
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| T |
47462407 |
aaaacccatttcacgagtgtcatcgcaagcaaaagttccactatgtttgttgaatgttttgagacattaaccccacaacctgcgtaaattccggacagta |
47462308 |
T |
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| Q |
118 |
acaagatttgatttgtctaaaaaactttcgtgaagttttcaggaacaattctttccctttaaatatcaatgcccttaacaaaatccacgctaggaaagtc |
217 |
Q |
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| T |
47462307 |
acaagatatgatttgtctaaaaaactttcatgaagttttcaggaacaattctttccctttaaatatcaatgcccttaacaaaatccacgctaggaaagtc |
47462208 |
T |
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| Q |
218 |
acaagactttcccatgttaaacctcacctatg |
249 |
Q |
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| T |
47462207 |
acaagactttcccatgctaaatctcacctatg |
47462176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 18 - 182
Target Start/End: Complemental strand, 19580998 - 19580834
Alignment:
| Q |
18 |
aaaacccgtttcacgagtgccatcgcaagcaaaagttccactatatttgttgaatgttttgagacattaaccccacaacctgcgtgaatttcggacagta |
117 |
Q |
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||||||| ||||||||||| |||||| ||||||||||||||||| |||||||||| ||| || | ||||||||| | ||||||||||||| |||| || |
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| T |
19580998 |
aaaacccatttcacgagtggcatcgcgagcaaaagttccactatgtttgttgaatatttcgaaaaattaaccccgccacctgcgtgaattctggactata |
19580899 |
T |
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| Q |
118 |
acaagatttgatttgtctaaaaaactttcgtgaagttttcaggaacaattctttccctttaaata |
182 |
Q |
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|||||||||||| ||| |||||| || |||||| ||||| |||||||||||||||||||||||| |
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| T |
19580898 |
ccaagatttgattggtccaaaaaaattacgtgaaattttcgggaacaattctttccctttaaata |
19580834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 63 - 182
Target Start/End: Original strand, 1862012 - 1862131
Alignment:
| Q |
63 |
tttgttgaatgttttgagacattaaccccacaacctgcgtgaatttcggacagtaacaagatttgatttgtctaaaaaactttcgtgaagttttcaggaa |
162 |
Q |
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||||||||| ||||||| | ||| ||| ||| |||| |||||||| ||| |||||| |||||||||| |||||||| | ||||| ||| |||| |||| |
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| T |
1862012 |
tttgttgaaagttttgaaaaattgacctcaccacctacgtgaattccgggtagtaacgagatttgattggtctaaaagagtttcgaaaagctttcgggaa |
1862111 |
T |
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| Q |
163 |
caattctttccctttaaata |
182 |
Q |
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||||| |||||||||||||| |
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| T |
1862112 |
caattatttccctttaaata |
1862131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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