View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13039_low_18 (Length: 252)
Name: NF13039_low_18
Description: NF13039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13039_low_18 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 139; Significance: 8e-73; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 114 - 252
Target Start/End: Complemental strand, 30286279 - 30286141
Alignment:
| Q |
114 |
cacacatatttgagatatatttttagaataaacttattaaataaactaaatactcatttgcaaacattaactaattttctctttaaaggataaacttaca |
213 |
Q |
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| T |
30286279 |
cacacatatttgagatatatttttagaataaacttattaaataaactaaatactcatttgcaaacattaactaattttctctttaaaggataaacttaca |
30286180 |
T |
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| Q |
214 |
aaaccatacaaattgtaggtattaaaattaataaataaa |
252 |
Q |
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| T |
30286179 |
aaaccatacaaattgtaggtattaaaattaataaataaa |
30286141 |
T |
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Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 10 - 67
Target Start/End: Complemental strand, 30286383 - 30286326
Alignment:
| Q |
10 |
aagaatatgatctaccataatcctagaagagaaactatagtatccataataaccgtgg |
67 |
Q |
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| T |
30286383 |
aagaaaatgatctaccataatcctagaagagaaactatagtatccataataaccgtgg |
30286326 |
T |
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