View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13039_low_19 (Length: 241)
Name: NF13039_low_19
Description: NF13039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13039_low_19 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 30286070 - 30285898
Alignment:
| Q |
1 |
tttagtctctaacatattcatcgaagaaattaaattgacgatttgcatatagtttaaagaatttttattatatttacataatttataaactaaattgagg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
30286070 |
tttagtctctaacatattcatcgaagaaattaaattgacgatttgcatacaatttaaagaatttttattatatttacataatttataaactaaattgggg |
30285971 |
T |
|
| Q |
101 |
agaccgtgatagtttaggaacataatccattctaaatttaattgtgttaattcatgtaatttactccaggtgg |
173 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
30285970 |
agaccgtgatagtttaggaacataatccattctaaatttaattgtgttaattcatgtaatttactcaaggtgg |
30285898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 176 - 225
Target Start/End: Complemental strand, 30285844 - 30285796
Alignment:
| Q |
176 |
agactataaatatttatggaagtacgactaatgcactcaagagtgaattt |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
30285844 |
agactataaatatttatggaagtacgactaatgcactcaa-agtgaattt |
30285796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University