View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13039_low_2 (Length: 697)
Name: NF13039_low_2
Description: NF13039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13039_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 47426382 - 47426089
Alignment:
| Q |
1 |
tgaatatgttaggaatgatgatttatatgaagaggtgaggagaaattagtagaggatggagatcgaaagggaggatnnnnnnnttaatgatggtgttaat |
100 |
Q |
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| T |
47426382 |
tgaatatgttaggaatgat---ttatatgaaggggtgaggagaaattagtagaggatggagatcgaaagggaggataaaaaaattaatgatggtgttaat |
47426286 |
T |
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| Q |
101 |
gtggaggttacggtggaatataatgacaccaatagtacttcatatatatgtttaataaaggttatgtctttgaaacacaacactaaatacaaat------ |
194 |
Q |
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| T |
47426285 |
gtggaggttacggtggaatataatgacaccaatagtacttcatatatatgtttaataaaggttatgtctttgaaacacaacactaaatacaaattaaaaa |
47426186 |
T |
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| Q |
195 |
-----caaatttacacgcctaaaatgattgttattaatgaggatcgattatgttaatatttttgtagtgaattttgatcgtaataatgtatagtttaa |
287 |
Q |
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| T |
47426185 |
caagacaaatttacacgcctaaaatgattgttattaatgaggatcga-tatgttaatatttttgtagtgaattttgatcgtaataatgtttagtttaa |
47426089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 299 - 493
Target Start/End: Complemental strand, 47426007 - 47425813
Alignment:
| Q |
299 |
ggcattgtgcgtgatatgccaagacgtatatataaataacaattgttttatcattttctctaggtttttagatgaactaaatctaaatccttgtcacgaa |
398 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
47426007 |
ggcactgtgcgtgatatgccaagacgtatatataaataacaattattttatcattttctctaggtttttagatgaactaaatctaaatccttgtcatgaa |
47425908 |
T |
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| Q |
399 |
caactaattcatgtggtcgataagctattgatctagtcattctccatgaatatgacgatctttctttccacttctcatctcattcaaccttgtat |
493 |
Q |
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| T |
47425907 |
caactaattcatgtggtcaatccgcaattgatctagtcattcttcatgaatatgacgatctttctttccacttctcatctcattcaaccttgtat |
47425813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 575 - 682
Target Start/End: Complemental strand, 47425731 - 47425624
Alignment:
| Q |
575 |
ttacactaaagtgaaagcttcttgtataacgaatccttaatcgcattagttactcacatatccaagacacttgattagtagtatggtgtccaaactcact |
674 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47425731 |
ttacactaaagtgaaagcttcttgtataacaaatccttaatcgcattagttactcacatatccaagacacttgattagtagtatggtgtccaaactcact |
47425632 |
T |
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| Q |
675 |
tgtgtggt |
682 |
Q |
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|||||||| |
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| T |
47425631 |
tgtgtggt |
47425624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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